View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5035-Insertion-7 (Length: 470)
Name: NF5035-Insertion-7
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5035-Insertion-7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 23582959 - 23583417
Alignment:
| Q |
11 |
agagagacttgaagggcgaaggcttcascttctcgtcacagaatagagaaaagagatgagaggatannnnnnngctattatccgaatgaaatgcattttg |
110 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23582959 |
agagaggcttgaagggcgaaggcttcagcttctcgtcacagaatagagaaaagagatgagaggatatttttttgctattatccgaatgaaatgcattttg |
23583058 |
T |
|
| Q |
111 |
ttt-gcgaggtagagacaactgcacgatatgggtagtggaagattttcagccagcgactgtgtgacacgtcattacatattattaccggtggttatttgc |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23583059 |
ttttgcgaggtagagacaactgcacgatatgggtagtggaagattttcagccagcgactgtgtgacacgtcattacatattattaccggtggttatttgc |
23583158 |
T |
|
| Q |
210 |
ttcttgcaatttttagtcnnnnnnnntgttatttgctcttgcaatttttagtcaaaaataaataaaatggaaggaaacggtgttcaattaaagaacgatg |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23583159 |
ttcttgcaatttttagtcaaaaaaaatgttatttgctcttgcaatttttagtcaaaaaaaaaaaaaatggaaggaaacggtgttcaattaaagaacgatg |
23583258 |
T |
|
| Q |
310 |
acttcaattttagataannnnnnnnnnnnaaaaatattcacatacatagaaaacatgacattgtaaacttgtggcataacataaaacaagttatggaaaa |
409 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
23583259 |
acttcaattttagataa-ttttttattttaaaaatattcacatacatagaaaacattacattgtaaacttgtggcataacataaatcaaattatggaaaa |
23583357 |
T |
|
| Q |
410 |
taayaaaatctcaatgaaaacaactcgagatagtttgtcacattgtattgaactactcta |
469 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
23583358 |
taataaaatctcaacgaaaacaactccagatagtttgtcacattgtattgagctactcta |
23583417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University