View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5035-Insertion-8 (Length: 141)
Name: NF5035-Insertion-8
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5035-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 8e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 54306387 - 54306491
Alignment:
| Q |
8 |
ctatcttgtttgggaactccatcttctgattttgtatcttgtaggcagtagtttttgcagtgtgaacaaggacatttaatcaagcattttgaacagctca |
107 |
Q |
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| T |
54306387 |
ctatcttgtttgggaactccatcttctgattttgtatcttgtaggcagtagtttttgcagtgtgaacaaggacatttaatcaagcattttgaacagctca |
54306486 |
T |
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| Q |
108 |
tccag |
112 |
Q |
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||||| |
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| T |
54306487 |
tccag |
54306491 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 54300283 - 54300325
Alignment:
| Q |
70 |
tgaacaaggacatttaatcaagcattttgaacagctcatccag |
112 |
Q |
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| T |
54300283 |
tgaacaaggatatttaatcaagcattttgaacagctcgtccag |
54300325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 54287656 - 54287743
Alignment:
| Q |
25 |
tccatcttctgattttgtatcttgtaggcagtagtttttgcagtgtgaacaaggacatttaatcaagcattttgaacagctcatccag |
112 |
Q |
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| T |
54287656 |
tccatcttgtgattttataacttctaggcggcatgttttgcaatgtgaacaaggactgttgatcaagcattatgaaaagctcgtccag |
54287743 |
T |
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