View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5035_high_4 (Length: 449)
Name: NF5035_high_4
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5035_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 110 - 431
Target Start/End: Complemental strand, 39000552 - 39000241
Alignment:
| Q |
110 |
aaagaaactaggtttataaaactgtgttatatggctggcaaaggaaaggaaaatcaaatgagtatgtttgttttttgttattaaaatgttcaccaatcat |
209 |
Q |
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| T |
39000552 |
aaagaaactaggtttataaaactgtgttatatggctggcaaaggaaa-----atcaaatgagtatgtttgttttttgttattaaa-tgttcaccaatcat |
39000459 |
T |
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| Q |
210 |
gttggttgtgtggggttggaattaagtggtccaggccatatataatgtaatcagttacaacttacaagtgtaataaaataacccatgtcagtcaatccta |
309 |
Q |
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| T |
39000458 |
gttggttgtgtggggttggaattgagtggtccaggccatatataatgtaatcagttacaacttacaagtgtaataaaataacccatgtcagtcaatccta |
39000359 |
T |
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| Q |
310 |
actcgggtataaccaaccggtcggtttgattcaattttcaaacatgtttggattggtttggttcgctttatgcannnnnnnnnnnngtataaactagaac |
409 |
Q |
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| T |
39000358 |
actcgggtataacc-accggtcggtttcattcaattttcaaacatgtttggattggtttggttcgctttatgca---tttttttttgtataaactagaac |
39000263 |
T |
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| Q |
410 |
caatggaatcttatgatgcaaa |
431 |
Q |
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| T |
39000262 |
caatggaatcttatgatacaaa |
39000241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 39000613 - 39000550
Alignment:
| Q |
12 |
atgaatcctaagagggctgttgctagtaggaagaaattatgaggcagatccatgtgttgtcaaa |
75 |
Q |
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| T |
39000613 |
atgaatcctaagagggctgttgctagtaggaagaaattatgaggcagatccatgtgttgtcaaa |
39000550 |
T |
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