View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5035_low_1 (Length: 699)

Name: NF5035_low_1
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5035_low_1
NF5035_low_1
[»] chr2 (1 HSPs)
chr2 (19-684)||(41403294-41403949)


Alignment Details
Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 19 - 684
Target Start/End: Complemental strand, 41403949 - 41403294
Alignment:
Q  19 agaaggtcttgaagaaatgcttggtttttgttgcatagccgtgacactatcgattccaagatcgctcgccgaaggcttcgacgtttcataagaaatatct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41403949 agaaggtcttgaagaaatgcttggtttttgttgcatagccgtgacactatcgattccaagatcgctcgccgaaggctttgacgtttcataagaaatatct 41403850  T
Q  119 ttcactaaacttgatccaagcttttttggagcctgagttccagctagcaacttttcccccttgggaaagtgccaaatttcagtttgcttggaccggaagg 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41403849 ttcactaaacttgacccaagcttttttggagcctgagttccagctagcaacttttcccccttgggaaagtgccaaatttcagtttgcttggaccggaagg 41403750  T
Q  219 tactagagctaatgtttttcaccttagaaggcgcagttaaaggaaatgatcctgattttgtcaatttcgctttattgtgaggagtttgatgaannnnnnn 318  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  41403749 tactagagctaatgtttttcaccttagaaggcgcggttaaaggaaatgatcctgattttgtcaatttcgctttattgtgaggagtttgatgaattttttt 41403650  T
Q  319 accaccaatgtctatatctcttagaaatttgagtaatgcatttttctccacattaattacctccaaaacatcatcattgtttttgaatttaattgaaatg 418  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41403649 accaccaatgtctatatctcttagaaatttgagtaatgcattcttctccacattaattacctccaaaacatcatcattgtttttgaatttaattgaaatg 41403550  T
Q  419 tctctgttaagggaaccttgatccgttgttgtcttgacatctttcttctgatgaagtccattcccactactagcctgacctttagcatttgatatttctc 518  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41403549 tctctgttaagggaaccttgatctgttgttgtattgacatctttcttctgatgaagtgcattcccactactagcctgacctttagcatttgatatttctc 41403450  T
Q  519 tatgttgacttacctgatatttatattttatatttgattcaaccacaattattatatacaatacaataattctaaataattcttttatttatttgttggt 618  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  41403449 tatgttgacttacctgatatttatattttatattagattcaaccacaattattatatacaatac----------aataattcttttatttatttgttggt 41403360  T
Q  619 gtgaccataaaatataatcatgaatctttaaacatacctttagggattctgcatctgtaactgcat 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41403359 gtgaccataaaatataatcatgaatctttaaacatacctttagggattctgcatctgtaactgcat 41403294  T

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