View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5035_low_2 (Length: 511)
Name: NF5035_low_2
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5035_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 43601820 - 43601446
Alignment:
| Q |
18 |
atgcccagatttatatcagcatttgccaattgccattgcaacttcgcacaaagcatcattaaaattataataaccacaggtttcaggttgtgatgtgaaa |
117 |
Q |
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| T |
43601820 |
atgcccagatttatagcagcatttgccaattgccaatgcaacttcgcacaaagcatcattaaaattataataaccacaggtttcaggttgtgatttgaaa |
43601721 |
T |
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| Q |
118 |
tttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaaatgctaaacataaaagtatacaatacttgcattgcaagtaa |
217 |
Q |
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| T |
43601720 |
tttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaaatgctaaacataaaagtatacaatacttgcattgcaagtaa |
43601621 |
T |
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| Q |
218 |
tcccttaaaactgccacaacactactaagactaataattatttcctctattttactcattttttcttaattcaaaccaatgtggaatataaactagttaa |
317 |
Q |
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| T |
43601620 |
tcccttaaaactgccacaacactactaagactaataattatttcctctattttactcattttttcttaattcaaaccagtgtggaatataaactagttaa |
43601521 |
T |
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| Q |
318 |
gctcataatacaatttattttctaaaacaactcaaattcttgataaaatgttttttgtaaccgcaaattttatta |
392 |
Q |
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| T |
43601520 |
gctcataatacaatttattttctaaaaaaactcaaattcttgataaaatgttttttgaaaccgcaaattttatta |
43601446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 43601446 - 43601369
Alignment:
| Q |
429 |
acctcgggtctctttataactccactccttaactcattcacattaaccattatgtcatatttatattcctttgcttct |
506 |
Q |
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| T |
43601446 |
acctcgggtctctttataactccactccttaactcattcacattaaccattatgtcatatttatattcctttgtttct |
43601369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 29259294 - 29259210
Alignment:
| Q |
168 |
caatctcaaatgctaaacataaaagtatacaatacttgcattgcaagtaatcccttaaaactgccacaacactactaagactaat |
252 |
Q |
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| T |
29259294 |
caatctcaaatgctaaatccaaaagaatagattacttgcattacaagtaattccttaaaactaccacaaaactaccgagactaat |
29259210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 8440748 - 8440677
Alignment:
| Q |
105 |
ttgtgatgtgaaatttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaaa |
177 |
Q |
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| T |
8440748 |
ttgtaatgtgaaatattgatttcattccat-ctctaatgatacaagggaggcttatttatagccaatttcaaa |
8440677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 1176062 - 1175999
Alignment:
| Q |
113 |
tgaaatttttatttcattcaattctctaatgatacaagggaggcatatatatggccaatctcaaa |
177 |
Q |
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| T |
1176062 |
tgaaatattgatttcattca-ttcgctaatgatacaagggaggcttatttatagccaatctcaaa |
1175999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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