View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5035_low_3 (Length: 469)
Name: NF5035_low_3
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5035_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 20756887 - 20756507
Alignment:
| Q |
16 |
atgaattaagaaattaatcagaaaccaccagacacaaaataaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaacttcttgtgat |
115 |
Q |
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| T |
20756887 |
atgaattaagaaattaatcaaaaaccactagacacaaaataaaatcacagggttccccttgttatcaatgtttttggtagaggaagcaacttcttgtgat |
20756788 |
T |
|
| Q |
116 |
ttaaatctatgtgttcctatagtagacataatcattctgtaatttttaatttaatgtaacatggccagctaatattatttatctttcctaattaaaaatg |
215 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20756787 |
ttaaatctatgtgttcccatagtagacagaatcattctgtaatttttaatttaatgtaacatggccagctaatattatttatcttacctaattaaaaatg |
20756688 |
T |
|
| Q |
216 |
atgcaaacttttatttgaaattttgaagatatattgtcttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgtat |
315 |
Q |
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| T |
20756687 |
atgcaaacttttatttgaaattttgaagatatattgtcttggtgttggcatgtctctagggtccaccaattctatatagtttaattctttgcatgtgtat |
20756588 |
T |
|
| Q |
316 |
ttctaatatggtttcaatacataaaggttgcataattgctaatggaatctggctataaagttggtctatgtagctttcgat |
396 |
Q |
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| T |
20756587 |
ttctaatatggtttcaatacataaaggttgcataattgctaatggaatctggctataaagttggtctatgtagctttcgat |
20756507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 26 - 386
Target Start/End: Complemental strand, 20769104 - 20768735
Alignment:
| Q |
26 |
aaattaatcagaaaccaccagacacaaaa-taaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaacttcttgtgatttaaatcta |
124 |
Q |
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| T |
20769104 |
aaattaatcagaaaccacttgacaaaaaaataatatcatggggttccccttgttatcaatgtttttggcagaggtagcaacttgatgtgatttaaatcta |
20769005 |
T |
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| Q |
125 |
tgtgt-----tcctatagtagacataatcattctgtaatttttaatttaatgtaacatggccagctaatattatttatctttcctaattaaaaatgatgc |
219 |
Q |
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||| | |||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||| |
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| T |
20769004 |
tgtttggttttcctatagcaaacagaatcattctgtactttttaatttaatgtaacatggccagctaatattatttatattacctaattaacaatgatgc |
20768905 |
T |
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| Q |
220 |
aaacttttatttgaaattttgaagatatattgtcttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgtatttct |
319 |
Q |
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| T |
20768904 |
aaaattttatttgaaattttgaatatctattatcttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgtatttct |
20768805 |
T |
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| Q |
320 |
aatatggtttcaatacataaaggttgcata---attgctaatggaatctggctataaagttggtctatgt |
386 |
Q |
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| T |
20768804 |
aatatggtttcaatacataaaggttgcataattattgctaatggaatctggctataaagttggtctatgt |
20768735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 20747167 - 20747109
Alignment:
| Q |
254 |
ttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgt |
313 |
Q |
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| T |
20747167 |
ttggtgttggcatgcctctaggg-ctaccaattctatatagtttaattatttgcatgtgt |
20747109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 20748610 - 20748524
Alignment:
| Q |
20 |
attaagaaattaatcagaaaccaccagacacaaaataaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaactt |
107 |
Q |
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| T |
20748610 |
attaagaaattaat-agagaccagtagacaaaaatttaaatcatggggttccccttgttgtcaatgtttttggcagaggaagcaactt |
20748524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 48866896 - 48866789
Alignment:
| Q |
18 |
gaattaagaaattaatcagaaaccaccagacacaaaataaaatcacagggtttcccttgttatcaatgtttttggtagaggaagcaacttcttgtgattt |
117 |
Q |
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|||||||||||||||| |||||||| | ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48866896 |
gaattaagaaattaat--gaaaccactaaacaaaaaataaaatcacagcgttccccttcttatcaatgtttttggtagaggaagcaacttgttgtgattt |
48866799 |
T |
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| Q |
118 |
aaatctatgt |
127 |
Q |
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| T |
48866798 |
aaatctatgt |
48866789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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