View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5035_low_7 (Length: 201)

Name: NF5035_low_7
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5035_low_7
NF5035_low_7
[»] chr4 (10 HSPs)
chr4 (32-185)||(37807138-37807287)
chr4 (1-35)||(36099484-36099518)
chr4 (1-35)||(53621445-53621479)
chr4 (1-34)||(580528-580561)
chr4 (1-34)||(4758894-4758927)
chr4 (1-33)||(18135430-18135462)
chr4 (1-33)||(49122637-49122669)
chr4 (4-34)||(20688536-20688566)
chr4 (1-34)||(23125644-23125677)
chr4 (1-33)||(3085989-3086021)
[»] chr5 (10 HSPs)
chr5 (1-35)||(25027691-25027725)
chr5 (1-33)||(13144879-13144911)
chr5 (1-35)||(15569448-15569482)
chr5 (1-34)||(1643342-1643375)
chr5 (1-34)||(37699897-37699930)
chr5 (1-34)||(41989562-41989595)
chr5 (1-33)||(7053647-7053679)
chr5 (1-33)||(7749917-7749949)
chr5 (1-33)||(9601710-9601742)
chr5 (1-33)||(29374169-29374201)
[»] chr6 (6 HSPs)
chr6 (1-34)||(22880916-22880949)
chr6 (1-34)||(22898851-22898884)
chr6 (1-33)||(31971147-31971179)
chr6 (1-34)||(6045798-6045831)
chr6 (1-34)||(24949748-24949781)
chr6 (1-33)||(390922-390954)
[»] chr3 (12 HSPs)
chr3 (1-34)||(8243799-8243832)
chr3 (1-34)||(10049666-10049699)
chr3 (1-33)||(9440245-9440277)
chr3 (1-33)||(26999020-26999052)
chr3 (1-32)||(6087018-6087049)
chr3 (1-35)||(10049785-10049819)
chr3 (1-35)||(14768095-14768129)
chr3 (1-35)||(25846628-25846662)
chr3 (1-34)||(28945654-28945687)
chr3 (1-33)||(379069-379101)
chr3 (1-33)||(9465188-9465220)
chr3 (1-33)||(29019734-29019766)
[»] chr2 (10 HSPs)
chr2 (1-34)||(6761463-6761496)
chr2 (1-33)||(16241384-16241416)
chr2 (1-33)||(25892061-25892093)
chr2 (1-33)||(44737399-44737431)
chr2 (1-35)||(39377833-39377867)
chr2 (1-34)||(11711441-11711474)
chr2 (1-34)||(18452567-18452600)
chr2 (1-34)||(29866080-29866113)
chr2 (1-33)||(20427000-20427032)
chr2 (1-33)||(41260024-41260056)
[»] chr1 (8 HSPs)
chr1 (1-34)||(2352307-2352340)
chr1 (1-34)||(14281588-14281621)
chr1 (1-34)||(38830481-38830514)
chr1 (3-34)||(23398078-23398109)
chr1 (1-35)||(39720783-39720817)
chr1 (1-34)||(9302036-9302069)
chr1 (1-34)||(34718889-34718922)
chr1 (1-33)||(29312438-29312470)
[»] chr8 (6 HSPs)
chr8 (1-33)||(2229187-2229219)
chr8 (1-35)||(2339287-2339321)
chr8 (4-33)||(25848087-25848116)
chr8 (1-33)||(11293304-11293336)
chr8 (1-33)||(29563657-29563689)
chr8 (1-33)||(45145868-45145900)
[»] chr7 (5 HSPs)
chr7 (1-33)||(23248785-23248817)
chr7 (1-34)||(5909588-5909621)
chr7 (1-33)||(5347839-5347871)
chr7 (6-34)||(7107752-7107780)
chr7 (1-33)||(35427776-35427808)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-34)||(35952-35985)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 37807287 - 37807138
Alignment:
Q  32 tatagaatttcaagaaagtgacattttttatgaagagaatttaattgggtgaaaaatgaagaggatttgatgacgttttttgttgttgtcattataatac 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37807287 tatagaatttcaagaaagtgacattttttatgaagagaatttaattgggtgaaaaatgaagaggatttgatgacgttttttgttgttgtcattataatac 37807188  T
Q  132 tttacttcttttcaccaaataagctaaattctaatcccaagggctataattcat 185  Q
    ||||||||| |    |||||||||||||||||||||||||||||||||||||||    
T  37807187 tttacttctct----caaataagctaaattctaatcccaagggctataattcat 37807138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36099518 - 36099484
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36099518 aattgtctcttgtaaataggaccggaggtagtata 36099484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 53621445 - 53621479
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||||||||||    
T  53621445 aattgtctcttgtaaataggaccggaggtagtata 53621479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 580528 - 580561
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  580528 aattgtctcttgtaaataggaccggaggtagtat 580561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4758894 - 4758927
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4758894 aattgtctcttgtaaataggaccggaggtagtat 4758927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18135430 - 18135462
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  18135430 aattgtctcttgtaaataggaccggaggtagta 18135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49122637 - 49122669
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  49122637 aattgtctcttgtaaataggaccggaggtagta 49122669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 20688536 - 20688566
Alignment:
Q  4 tgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||||||    
T  20688536 tgtctcttgtaaataggaccggaggtagtat 20688566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23125677 - 23125644
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  23125677 aattgtctcttgtaaataggaccggagggagtat 23125644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3085989 - 3086021
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  3085989 aattgtctcttgtaaataggaccggagggagta 3086021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25027725 - 25027691
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||||||||||    
T  25027725 aattgtctcttgtaaataggaccggaggtagtata 25027691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13144911 - 13144879
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  13144911 aattgtctcttgtaaataggaccggaggtagta 13144879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15569448 - 15569482
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  15569448 aattgtctcttgtaaataggaccggaggaagtata 15569482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1643375 - 1643342
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||| |||||||||||||||||||||||||    
T  1643375 aattgtctattgtaaataggaccggaggtagtat 1643342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37699897 - 37699930
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||| |||||||    
T  37699897 aattgtctcttgtaaataggaccggatgtagtat 37699930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41989595 - 41989562
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  41989595 aattgtctcttgtaaataggaccggaggaagtat 41989562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7053679 - 7053647
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  7053679 aattgtctcttgtaaataggaccggagggagta 7053647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7749949 - 7749917
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  7749949 aattgtctcttgtaaataggaccggagggagta 7749917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9601710 - 9601742
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  9601710 aattgtctcttgtaaataggaccggagggagta 9601742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29374201 - 29374169
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    ||||||||||||||||||||| |||||||||||    
T  29374201 aattgtctcttgtaaataggatcggaggtagta 29374169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22880949 - 22880916
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22880949 aattgtctcttgtaaataggaccggaggtagtat 22880916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22898884 - 22898851
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22898884 aattgtctcttgtaaataggaccggaggtagtat 22898851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31971147 - 31971179
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  31971147 aattgtctcttgtaaataggaccggaggtagta 31971179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6045798 - 6045831
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  6045798 aattgtctcttgtaaataggaccggagggagtat 6045831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24949748 - 24949781
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  24949748 aattgtctcttgtaaataggaccggagggagtat 24949781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 390922 - 390954
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  390922 aattgtctcttgtaaataggaccggagggagta 390954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8243799 - 8243832
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8243799 aattgtctcttgtaaataggaccggaggtagtat 8243832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10049699 - 10049666
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10049699 aattgtctcttgtaaataggaccggaggtagtat 10049666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9440245 - 9440277
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  9440245 aattgtctcttgtaaataggaccggaggtagta 9440277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26999052 - 26999020
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  26999052 aattgtctcttgtaaataggaccggaggtagta 26999020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6087018 - 6087049
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagt 32  Q
    ||||||||||||||||||||||||||||||||    
T  6087018 aattgtctcttgtaaataggaccggaggtagt 6087049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10049785 - 10049819
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  10049785 aattgtctcttgtaaataggaccggagggagtata 10049819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14768129 - 14768095
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  14768129 aattgtctcttgtaaataggaccggagggagtata 14768095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25846628 - 25846662
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  25846628 aattgtctcttgtaaataggaccggaagtagtata 25846662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28945687 - 28945654
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  28945687 aattgtctcttgtaaataggaccggagggagtat 28945654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 379101 - 379069
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  379101 aattgtctcttgtaaataggaccggagggagta 379069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9465188 - 9465220
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  9465188 aattgtctcttgtaaataggaccggagggagta 9465220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29019766 - 29019734
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  29019766 aattgtctcttgtaaataggaccggagggagta 29019734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6761496 - 6761463
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6761496 aattgtctcttgtaaataggaccggaggtagtat 6761463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16241384 - 16241416
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  16241384 aattgtctcttgtaaataggaccggaggtagta 16241416  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25892061 - 25892093
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  25892061 aattgtctcttgtaaataggaccggaggtagta 25892093  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44737399 - 44737431
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  44737399 aattgtctcttgtaaataggaccggaggtagta 44737431  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39377867 - 39377833
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  39377867 aattgtctcttgtaaataggaccggagggagtata 39377833  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11711441 - 11711474
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  11711441 aattgtctcttgtaaataggaccggagggagtat 11711474  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18452600 - 18452567
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||| |||||||||||    
T  18452600 aattgtctcttgtaaataggactggaggtagtat 18452567  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29866113 - 29866080
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  29866113 aattgtctcttgtaaataggaccggagggagtat 29866080  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20427032 - 20427000
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  20427032 aattgtctcttgtaaataggaccggagggagta 20427000  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41260056 - 41260024
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  41260056 aattgtctcttgtaaataggaccggagggagta 41260024  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2352340 - 2352307
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2352340 aattgtctcttgtaaataggaccggaggtagtat 2352307  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14281621 - 14281588
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  14281621 aattgtctcttgtaaataggaccggaggtagtat 14281588  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38830514 - 38830481
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38830514 aattgtctcttgtaaataggaccggaggtagtat 38830481  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 23398109 - 23398078
Alignment:
Q  3 ttgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||||||||||||||||||||||||    
T  23398109 ttgtctcttgtaaataggaccggaggtagtat 23398078  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39720783 - 39720817
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  39720783 aattgtctcttataaataggaccggaggtagtata 39720817  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9302036 - 9302069
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  9302036 aattgtctcttataaataggaccggaggtagtat 9302069  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34718922 - 34718889
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  34718922 aattgtctcttgtaaataggaccggagggagtat 34718889  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29312470 - 29312438
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  29312470 aattgtctcttgtaaataggaccggaggaagta 29312438  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2229187 - 2229219
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  2229187 aattgtctcttgtaaataggaccggaggtagta 2229219  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2339321 - 2339287
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtata 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  2339321 aattgtctcttgtaaataggaccggagggagtata 2339287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 25848087 - 25848116
Alignment:
Q  4 tgtctcttgtaaataggaccggaggtagta 33  Q
    ||||||||||||||||||||||||||||||    
T  25848087 tgtctcttgtaaataggaccggaggtagta 25848116  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11293304 - 11293336
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  11293304 aattgtctcttgtaaataggaccggaggaagta 11293336  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29563689 - 29563657
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  29563689 aattgtctcttgtaaataggaccggagggagta 29563657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45145900 - 45145868
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  45145900 aattgtctcttgtaaataggaccggagggagta 45145868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23248785 - 23248817
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  23248785 aattgtctcttgtaaataggaccggaggtagta 23248817  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5909588 - 5909621
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  5909588 aattgtctcttgtaaataggaccggaggaagtat 5909621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5347839 - 5347871
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  5347839 aattgtctcttgtaaataggaccggagggagta 5347871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 7107752 - 7107780
Alignment:
Q  6 tctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||||    
T  7107752 tctcttgtaaataggaccggaggtagtat 7107780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35427776 - 35427808
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  35427776 aattgtctcttgtaaataggaccggagggagta 35427808  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35985 - 35952
Alignment:
Q  1 aattgtctcttgtaaataggaccggaggtagtat 34  Q
    |||||||||||||||||||||||||||| |||||    
T  35985 aattgtctcttgtaaataggaccggagggagtat 35952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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