View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5036-Insertion-1 (Length: 1006)
Name: NF5036-Insertion-1
Description: NF5036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5036-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 177 - 663
Target Start/End: Complemental strand, 41802105 - 41801604
Alignment:
| Q |
177 |
tttttagagggatgaattaaacgagacaaattgttttagatc-----------tcatgtttgggacttcatcttacaatggttttgattgaaaattctat |
265 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41802105 |
tttttaaagggataaattaaacgagacaaattgttttagatcagaatataatctcatgtttgggacttcatcttacaatggttttgattgaaaattctat |
41802006 |
T |
|
| Q |
266 |
atacactgtaaaattgaaaattgcccgaatcgtatatgcgaaacctcatggcttgtgaaagagacaaggaaatttgattgagggaaacaaacttctaaga |
365 |
Q |
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||||||||||||||||||||||| || | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41802005 |
atacactgtaaaattgaaaattgtcctagtcgtatatgcgaagcttcatggcttgtgaaagagacaaggaaatttgattgagggaaacaaacttctaaga |
41801906 |
T |
|
| Q |
366 |
ggtggtaaaaacacacttcaaactcatgaacactaatttaattgag--ttttctttt--taaaaaccaatccatttaatcnnnnnnnnnnnnttaattca |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||| |||||||| |
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| T |
41801905 |
ggtggtaaaaacacacttcaaactcatgaacactaatttaattgagttttttcttttaattaaaaccaattcatttaatcaaaaaataaaagttaattca |
41801806 |
T |
|
| Q |
462 |
cgtgacaactagcctttacttctttcttgtttggttattgtctacattaaattttgaggcataggagaaataaatgaaaacacaattttagaagacacag |
561 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41801805 |
cgtgacaactagcctttacttctttcttgtttggttattgtctacattaaattttgaggcataggagaagtaaatgaaaacacaattttagaagacacag |
41801706 |
T |
|
| Q |
562 |
tggcacacactttttctttcttgttcggttattgtcaaaatcaaaatgaaaaataaacaaatattcgttccatctcnnnnnnntttatttagttgattgt |
661 |
Q |
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| T |
41801705 |
tggcacacactttttctttcttgttcggttattgtcaaaatcaaaatgaaaaataaacaaatattcgttccgtctcaaaaaaaattatttagttgattgt |
41801606 |
T |
|
| Q |
662 |
ta |
663 |
Q |
| |
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|| |
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| T |
41801605 |
ta |
41801604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 41802634 - 41802511
Alignment:
| Q |
64 |
attatttctgccacttatatttagtgaaataaattatgttacgtttgacttcaagataaactttttattagtggccgttcttaattgtgttaatttgtaa |
163 |
Q |
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|||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||| |
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| T |
41802634 |
attatttctgccaccaatatttagtgaaaaaaattatattacgtttgacttcaagataaac-ttttcttagtgatcgttcttaattgtgttaatttataa |
41802536 |
T |
|
| Q |
164 |
gcaacttgcacaatttttagaggga |
188 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
41802535 |
gcaacttgcataatttttagaggga |
41802511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 64 - 624
Target Start/End: Original strand, 3382135 - 3382722
Alignment:
| Q |
64 |
attatttctgccacttatatttagtgaaataaattatgttacgtttgacttcaagataaactttttattagtggccgttcttaattgtgttaatttgtaa |
163 |
Q |
| |
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||||||| || ||| |||||||||||||| ||||||||||| |||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||| | |
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| T |
3382135 |
attatttttgtcacctatatttagtgaaaaaaattatgttatgtttgacttcaatatatactttttcttagtggttgttcttaattgtgttaatttgtga |
3382234 |
T |
|
| Q |
164 |
gcaacttgcacaatttttagagggatgaattaaacgagacaaattgttttagatc-----------tcatgtttgggacttcatcttacaatggttttga |
252 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||| | |||||||| |
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| T |
3382235 |
gcaacttgcacaatatttagagggataaattaaacgagacaaattgttgtagatcagaatatatattcatatttgggacttcatcttgaa--ggttttga |
3382332 |
T |
|
| Q |
253 |
ttgaaaattctatatacactgtaaaat----------tgaaaattgcccgaatcgtatatgcgaaacctcatggcttgtgaaagagacaaggaaatttga |
342 |
Q |
| |
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|||||||||||||||| ||| |||||| | |||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||| | | |
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| T |
3382333 |
ttgaaaattctatataaactataaaatgtaaaagattttaaaattgccccaatcgtatatgtgaaacttcatggcttgtgaaagagacagtaaaatatta |
3382432 |
T |
|
| Q |
343 |
ttgagggaaacaaacttctaagaggtggtaaaaacacacttcaaactcatgaacactaatttaattgagttttcttttt------aaaaaccaatccatt |
436 |
Q |
| |
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| |||||||||||||| || ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| ||||| |||||| ||| |||| |
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| T |
3382433 |
tcgagggaaacaaactcctgagaggtggtaaaagcacacttcaaactcctgaacgctaatttaattaagttttttttttttaaaaaaaaactaattcatt |
3382532 |
T |
|
| Q |
437 |
taatcnnnnnnnnnnnnttaattcacgtgacaactagcctttactt---ctttcttgtttggttattgtctacattaaattttgaggcataggagaaata |
533 |
Q |
| |
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|||| | |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3382533 |
taattaaaaaataaaaatgaattcacgtgacaactagcccgtactttttctttcttgttaggttattgtctacattaaattttgaggcataggagaaata |
3382632 |
T |
|
| Q |
534 |
aatgaaaacacaattttagaagacacagtggcacacactttttctttcttgttcggttattgtcaaaatcaaaatgaaaaataaacaaata |
624 |
Q |
| |
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|||||||||| || || |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3382633 |
aatgaaaacaaaaattctaaagacacagt-gcacaagctttttctttcttcttcggttattgtcaaaatcaaaatgaaaaataaacaaata |
3382722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 718 - 961
Target Start/End: Original strand, 3382813 - 3383060
Alignment:
| Q |
718 |
aaaaattataaaagttatcattttacaaatatttatcaagat-gaatctaacattctttnnnnnnnnnn-gacaattctaatattttatatgctatcatt |
815 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||||| || |||||||||| || ||||| | |||||||||||||||||||||| |
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| T |
3382813 |
aaaaattataaaagttatcgttttacaaatattcatcaagattgattctaacattccttaaaaaaaataagacaaatttaatattttatatgctatcatt |
3382912 |
T |
|
| Q |
816 |
tat--ttttatataataatnnnnnnnt--gatcgaagtatattatgtgagtagtacacattgtcaaacaaagtcaattatattaagtttgaattgagtaa |
911 |
Q |
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||| |||||||||||||| | |||| |||||| ||||||||||| ||| || ||||||||||||||||| ||||||||| ||||||||| |
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| T |
3382913 |
tatctttttatataataataaaaaaatatgatcaaagtatgttatgtgagtaataccaatgaccaaacaaagtcaattattttaagtttggattgagtaa |
3383012 |
T |
|
| Q |
912 |
tacttgtttaattgcgcatttggtcttcca-cttttttaatttggcaattt |
961 |
Q |
| |
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|| |||||||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
3383013 |
ta---gtttaattgcacatttggtcttccaccttttttaatttggtaattt |
3383060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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