View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5036-Insertion-7 (Length: 282)
Name: NF5036-Insertion-7
Description: NF5036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5036-Insertion-7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 41405705 - 41405440
Alignment:
| Q |
7 |
agtaagagcacttccatctacgttgagaattaatcatgtcatcctcatcccctttattccaacacacctcacgaattgttcgatgggagtgggaggttgg |
106 |
Q |
| |
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||||| ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
41405705 |
agtaaaagcacttccatctacattgagaat----catgtcatcctcatcctctttattccaacacacctcacaaattgttcgatgggag------gttgg |
41405616 |
T |
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| Q |
107 |
attttaaaacgtctgcttggaaacctgtagttgagtaaagatagatgttatgatctgatacttcacatcagttattcccttaaaaataaatttgttgcga |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41405615 |
atttcaaaacgtctgcttggaaacctgtagttgagtaaagttagatgttatgatgtggtacttcacatgagttattcccttaaaaataaatttgttgcga |
41405516 |
T |
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| Q |
207 |
gagatccaaatatttcacgttatcaatagagctaagatacccactccatccactaaggttatgaggatctttgaag |
282 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41405515 |
gagatccaaatattccacgttatcaatagagctaagatacccactccatccactaaggttatgaggatctttgaag |
41405440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 7219764 - 7219880
Alignment:
| Q |
85 |
ttcgatgggagtgggaggttggattttaaaacgtctgcttggaaacctgtagttgagtaaagatagatgttatgatctgatacttcacatcagttattcc |
184 |
Q |
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||||| |||||| |||||||||| | ||||| || | ||||||| |||| |||||||| ||||||| ||||||||| |||||||||| | || |||| |
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| T |
7219764 |
ttcgaggggagttggaggttggacgtccaaacgccttcctggaaacatgtaattgagtaa-gatagatattatgatctagtacttcacatgaattgttcc |
7219862 |
T |
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| Q |
185 |
cttaaaaataaatttgtt |
202 |
Q |
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|| || |||||||||||| |
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| T |
7219863 |
ctcaacaataaatttgtt |
7219880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 10795175 - 10794930
Alignment:
| Q |
13 |
agcacttccatctacgttgagaattaatcatgtcatcctcatcccctttattccaacacacctcacgaattgttcgatgggagtgggaggttggatttta |
112 |
Q |
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||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
10795175 |
agcacttccatctacattgagaat----catggcatcctcatcccctttattccaacacacctcacgagttgttcgatgggagtgggaggttggacttcc |
10795080 |
T |
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| Q |
113 |
aaacgtctgcttggaaacctgtagttgagtaaagatagatgttatgatctgatacttcacatcagttattcccttaaaaataaatttgttgcgagagatc |
212 |
Q |
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|| | |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||| |
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| T |
10795079 |
caatgcctgcttggaaacttgtagctgagtaaagatagatgttatgatctagtacttcataggagttgttcccttaaaaataaatttgttgcgagagatc |
10794980 |
T |
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| Q |
213 |
caaatatttcacgttatcaatagagctaagatacccactccatccactaa |
262 |
Q |
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|||||||| ||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
10794979 |
caaatattccacattatcaatggagctaagatacccacttcatccactaa |
10794930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 15581441 - 15581386
Alignment:
| Q |
52 |
catcccctttattccaacacacctcacgaattgttcgatgggagtgggaggttgga |
107 |
Q |
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||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
15581441 |
catcccctttattccaacacacctcacaggttgttctaggggagtgggaggttgga |
15581386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 50076544 - 50076299
Alignment:
| Q |
13 |
agcacttccatctacgttgagaattaatcatgtcatcctcatcccctttattccaacacacctcacgaattgttcgatgggagtgggaggttggatttta |
112 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| || |
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| T |
50076544 |
agcacttccatctacattgagaat----catggcatcctcatcccctttattccaacacatctcacgagttgttcgatgagagtgggaggttggacttcc |
50076449 |
T |
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| Q |
113 |
aaacgtctgcttggaaacctgtagttgagtaaagatagatgttatgatctgatacttcacatcagttattcccttaaaaataaatttgttgcgagagatc |
212 |
Q |
| |
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|| | |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| | |||| || |||||||||||||||||||||||||||| |
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| T |
50076448 |
caatgcctgcttggaaacttgtagctgagtaaagatagatgttatgatctagtacttcataggagttgtttccttaaaaataaatttgttgcgagagatt |
50076349 |
T |
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| Q |
213 |
caaatatttcacgttatcaatagagctaagatacccactccatccactaa |
262 |
Q |
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|||||||| ||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
50076348 |
caaatattccacattatcaatggagctaagatacccacttcatccactaa |
50076299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 50364054 - 50364308
Alignment:
| Q |
7 |
agtaagagcacttccatctacgttgagaattaatcatgtcatcctcatcccctttattccaacacacctcacgaattgttcgatgggagtgggaggttgg |
106 |
Q |
| |
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|||||||||||||||||| | |||||||| |||| ||||| |||||| ||||| ||||||||||||| | |||||||| |||| ||||| ||| |
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| T |
50364054 |
agtaagagcacttccatccatgttgagaac----catgccatccacatcccatttatgtcaacacacctcacaagttgttcgagtggagcaggaggctgg |
50364149 |
T |
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| Q |
107 |
attttaaaacgtctgcttggaaacctgtagttgagtaaagatagatgttatgatctgatacttcacatcagttattcccttaaaaataaatttgttgcga |
206 |
Q |
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| ||| |||||||||||||||||| ||||| | | |||| ||||||||| ||||||| || ||||||| | ||||||||| ||||||||||||||||||| |
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| T |
50364150 |
actttcaaacgtctgcttggaaacttgtagataaataaaaatagatgttgtgatctggtatttcacatgacttattccctcaaaaataaatttgttgcga |
50364249 |
T |
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| Q |
207 |
gagatccaaatatttcacgttatcaatagagctaagatacccactccatccactaaggt |
265 |
Q |
| |
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||||||||||||| ||| |||||||| ||||||||||||||||| || |||||||||| |
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| T |
50364250 |
gagatccaaatatcccacattatcaatggagctaagatacccacttcaaccactaaggt |
50364308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 25584301 - 25584096
Alignment:
| Q |
41 |
catgtcatcctcatcccctttattccaacacacctcacgaattgttcgatgggagtgggaggttggattttaaaacgtctgcttggaaacctgtagttga |
140 |
Q |
| |
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|||| ||||| ||||||| |||||||||| |||| | ||||| ||||||||| ||||||||| || |||||||||||| ||||| ||||| | |
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| T |
25584301 |
catggcatccacatcccccttattccaac-----tcacaagttgtttgatgggagttagaggttggacttccaaacgtctgcttcgaaacttgtagccaa |
25584207 |
T |
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| Q |
141 |
gtaaagatagatgttatgatctgatacttcacatcagttattcccttaaaaataaatttgttgcgagagatccaaatatttcacgttatcaatagagcta |
240 |
Q |
| |
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||||| ||||||||| ||||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||| || |||||||| |||||| |
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| T |
25584206 |
gtaaatatagatgttgtgatctggtacttcacaaaagttattccctgaaagataaatttactgcgagagatccaaatattcaacattatcaatggagcta |
25584107 |
T |
|
| Q |
241 |
agatacccact |
251 |
Q |
| |
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||||||||||| |
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| T |
25584106 |
agatacccact |
25584096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 8865516 - 8865671
Alignment:
| Q |
7 |
agtaagagcacttccatctacgttgagaattaatcatgtcatcctcatccccttta----ttccaacacacctcacgaa-ttgttcgatgggagtgggag |
101 |
Q |
| |
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|||||||||| ||||||||||| ||||||| |||| ||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |
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| T |
8865516 |
agtaagagcatttccatctacgatgagaat----catggcattgtcatcccctttacttattccaacacacctcacgaagttgttcgatgagagtgggag |
8865611 |
T |
|
| Q |
102 |
gttggattttaaaacgtctgcttggaaacctgtagttgagtaaagatagatgttatgatct |
162 |
Q |
| |
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||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8865612 |
gttggatttccaaacgcctgcttg-aaacctgtagttgagtaaagatagatgttataatct |
8865671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 34540686 - 34540516
Alignment:
| Q |
95 |
gtgggaggttggattttaaaacgtctgcttggaaacctgtagttga--gtaaagatagatgttatgatctgatacttcacatcagttattcccttaaaaa |
192 |
Q |
| |
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|||||||||| || ||| ||||| ||||||| |||| |||| ||| |||||||| || | | ||||||||||||||||| |||| |||||| ||||| |
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| T |
34540686 |
gtgggaggttagactttcaaacgcctgcttgaaaacatgtaattgtacgtaaagatggacggtgtgatctgatacttcacagaagttgttccctaaaaaa |
34540587 |
T |
|
| Q |
193 |
taaatttgttgcgagagatccaaatatttcacgttatcaatagagctaagatacccactccatccactaag |
263 |
Q |
| |
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|||||||||| ||||||||||||||||| | ||||||| ||||||||||| ||||| || |||||||| |
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| T |
34540586 |
taaatttgttacgagagatccaaatattcttcattatcaaccgagctaagatatccacttcacccactaag |
34540516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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