View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5036_high_1 (Length: 636)

Name: NF5036_high_1
Description: NF5036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5036_high_1
NF5036_high_1
[»] chr1 (16 HSPs)
chr1 (18-392)||(26837814-26838199)
chr1 (445-626)||(26837636-26837817)
chr1 (469-520)||(30847720-30847771)
chr1 (467-507)||(42004960-42005000)
chr1 (459-526)||(7918205-7918272)
chr1 (469-524)||(34712379-34712434)
chr1 (456-517)||(10380784-10380843)
chr1 (468-502)||(23440017-23440051)
chr1 (469-503)||(46348400-46348434)
chr1 (467-520)||(373053-373106)
chr1 (469-522)||(23804436-23804489)
chr1 (467-507)||(48415738-48415779)
chr1 (471-507)||(6573999-6574035)
chr1 (469-517)||(9656767-9656815)
chr1 (472-516)||(12611977-12612021)
chr1 (456-524)||(17754306-17754374)
[»] chr4 (13 HSPs)
chr4 (456-524)||(18513237-18513305)
chr4 (464-517)||(44081580-44081633)
chr4 (470-507)||(49659536-49659573)
chr4 (467-507)||(3144665-3144705)
chr4 (467-503)||(16303283-16303319)
chr4 (468-504)||(50848319-50848355)
chr4 (469-503)||(37203272-37203306)
chr4 (470-503)||(6273953-6273986)
chr4 (461-509)||(999359-999407)
chr4 (466-518)||(20119950-20120002)
chr4 (467-507)||(20743291-20743331)
chr4 (479-507)||(23386164-23386192)
chr4 (456-504)||(47191009-47191057)
[»] chr3 (11 HSPs)
chr3 (467-507)||(15864839-15864879)
chr3 (466-518)||(40150573-40150625)
chr3 (467-518)||(20691325-20691376)
chr3 (461-507)||(25074789-25074835)
chr3 (469-518)||(49505156-49505205)
chr3 (469-525)||(8164138-8164194)
chr3 (467-507)||(12704670-12704710)
chr3 (467-507)||(14223866-14223906)
chr3 (467-503)||(25326432-25326468)
chr3 (467-507)||(27903638-27903678)
chr3 (469-509)||(29508452-29508492)
[»] chr7 (10 HSPs)
chr7 (467-507)||(23751906-23751946)
chr7 (468-507)||(29812677-29812716)
chr7 (468-506)||(46644701-46644739)
chr7 (467-507)||(4017807-4017847)
chr7 (468-524)||(15902829-15902885)
chr7 (459-523)||(23128658-23128722)
chr7 (469-503)||(11831440-11831474)
chr7 (470-507)||(13427585-13427622)
chr7 (460-509)||(38134417-38134466)
chr7 (475-519)||(46550792-46550836)
[»] chr6 (14 HSPs)
chr6 (467-507)||(6389749-6389789)
chr6 (469-509)||(10842540-10842580)
chr6 (467-503)||(17168480-17168516)
chr6 (467-507)||(19602194-19602234)
chr6 (461-523)||(28862121-28862184)
chr6 (469-503)||(7938124-7938158)
chr6 (469-523)||(9195751-9195805)
chr6 (469-530)||(7086803-7086864)
chr6 (471-524)||(9024172-9024225)
chr6 (471-520)||(13364705-13364754)
chr6 (466-503)||(18252768-18252805)
chr6 (469-518)||(26178683-26178732)
chr6 (467-503)||(7625128-7625164)
chr6 (467-507)||(34446571-34446611)
[»] chr5 (11 HSPs)
chr5 (461-509)||(2577191-2577239)
chr5 (459-506)||(4344740-4344787)
chr5 (456-507)||(39696012-39696063)
chr5 (468-507)||(43554528-43554567)
chr5 (456-518)||(12927649-12927711)
chr5 (468-509)||(16881143-16881184)
chr5 (459-518)||(32630737-32630796)
chr5 (461-524)||(38749559-38749622)
chr5 (467-503)||(24906318-24906354)
chr5 (467-507)||(42469227-42469267)
chr5 (466-530)||(43208264-43208328)
[»] chr2 (15 HSPs)
chr2 (467-507)||(23354665-23354705)
chr2 (461-507)||(24011036-24011082)
chr2 (466-518)||(18570977-18571029)
chr2 (467-507)||(23355008-23355048)
chr2 (467-507)||(37986785-37986825)
chr2 (468-507)||(25544488-25544527)
chr2 (461-507)||(10535772-10535818)
chr2 (469-503)||(20539691-20539725)
chr2 (469-503)||(30335425-30335459)
chr2 (473-518)||(2423881-2423926)
chr2 (471-507)||(11308017-11308053)
chr2 (459-507)||(12748682-12748730)
chr2 (469-509)||(30527606-30527646)
chr2 (469-509)||(36281693-36281733)
chr2 (467-507)||(38919212-38919252)
[»] chr8 (8 HSPs)
chr8 (468-507)||(39820436-39820475)
chr8 (469-509)||(12559117-12559157)
chr8 (468-507)||(13845241-13845280)
chr8 (461-503)||(20873069-20873111)
chr8 (462-507)||(8017487-8017532)
chr8 (461-509)||(9936814-9936862)
chr8 (467-507)||(13009506-13009546)
chr8 (467-507)||(35431153-35431193)
[»] scaffold0049 (1 HSPs)
scaffold0049 (471-524)||(56932-56985)
[»] scaffold0037 (1 HSPs)
scaffold0037 (462-503)||(102906-102947)
[»] scaffold1528 (1 HSPs)
scaffold1528 (456-524)||(1030-1098)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 26838199 - 26837814
Alignment:
Q  18 aataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtgcatttttagtatcatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838199 aataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtgcatttttagtatcatg 26838100  T
Q  118 ttttataaattatgggnnnnnnntagaaagatc----attcttatttttgctaaacaatcggtacaagttagttcttgaaaagaagagaagacgacgaca 213  Q
    ||||||||||||||||       ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838099 ttttataaattatgggaaaaaaatagaaagatcgatcattcttatttttgctaaacaatcggtacaagttagttcttgaaaagaagagaagacgacgaca 26838000  T
Q  214 tgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaaaatacacacgctttgc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26837999 tgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaaaatacacacgctttgc 26837900  T
Q  314 aaagtaccaaccacatatc-------nnnnnnngagagaagaggaacaaaaatgatgtcgaacaccgaacacaaacatatgaacaa 392  Q
    |||||||||||||||||||              |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26837899 aaagtaccaaccacatatcttttttttttttttgagagaagagaaacaaaaatgatgtcgaacaccgaacacaaacatatgaacaa 26837814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 445 - 626
Target Start/End: Complemental strand, 26837817 - 26837636
Alignment:
Q  445 acaatatatgaacactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtcaaacaccaacacatatctgg 544  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  26837817 acaacatatgaacactgacatcaataataatttgaaaaaataatataatttagtgtaattatatgagtcagtgttgtgtcaaacaccaacgcatgtctgg 26837718  T
Q  545 caccaagacccacataattcaaggagggtatgatacaagtggtaaatattatataagctgtggtcattacttattagtatta 626  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26837717 caccaagacccacataattcaaggagtgtatgatacaagtggtaaatattatataagctgtggtcgttactcattagtatta 26837636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 30847771 - 30847720
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttg 520  Q
    ||||||||||||||||||| |||||| | |||||||||||| ||||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttg 30847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 42005000 - 42004960
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  42005000 gataataatttgagaaaatgacataatttagtgtaatcata 42004960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 526
Target Start/End: Complemental strand, 7918272 - 7918205
Alignment:
Q  459 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtcaa 526  Q
    ||||||||  ||||||||||| ||||| | |||||| |||||||| ||||| |||||||| |||||||    
T  7918272 ctgacatcactaataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcaa 7918205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 524
Target Start/End: Complemental strand, 34712434 - 34712379
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    ||||||||||| ||||| | ||||||||||||||| ||||| |||||||| |||||    
T  34712434 taataatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtc 34712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 517
Target Start/End: Original strand, 10380784 - 10380843
Alignment:
Q  456 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtg 517  Q
    ||||||||||| |||||||||||| || |  ||||||||||||||||||||| | |||||||    
T  10380784 acactgacatcaataataatttgagaata--atataatttagtgtaatcataggtgtcagtg 10380843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 23440017 - 23440051
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaa 502  Q
    |||||||||||| ||||||||||||||||||||||    
T  23440017 ataataatttgagaaaatgatataatttagtgtaa 23440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 503
Target Start/End: Complemental strand, 46348434 - 46348400
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||||||| |||||||||||||||||    
T  46348434 taataatttgaaaaaatcatataatttagtgtaat 46348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 520
Target Start/End: Original strand, 373053 - 373106
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttg 520  Q
    ||||||||||||| ||||||| || ||||||| |||||||||| ||| ||||||    
T  373053 gataataatttgagaaaatgacatgatttagtttaatcatatgtgtcggtgttg 373106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 522
Target Start/End: Original strand, 23804436 - 23804489
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtg 522  Q
    ||||||||||| ||||| |||||||||| |||||| ||||| |||| |||||||    
T  23804436 taataatttgataaaattatataatttaatgtaattatatgtgtcattgttgtg 23804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 48415779 - 48415738
Alignment:
Q  467 gataataatttgaaaaaa-tgatataatttagtgtaatcata 507  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  48415779 gataataattttaaaaaaatgatataatttagtgtaatcata 48415738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 507
Target Start/End: Original strand, 6573999 - 6574035
Alignment:
Q  471 ataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||| | |||||||||||||||||||||||||    
T  6573999 ataatttgagacaatgatataatttagtgtaatcata 6574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 9656815 - 9656767
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtg 517  Q
    |||||||||||||||||||| ||||| | |||||||| |||| ||||||    
T  9656815 taataatttgaaaaaatgatttaattgaatgtaatcacatgaatcagtg 9656767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 516
Target Start/End: Original strand, 12611977 - 12612021
Alignment:
Q  472 taatttgaaaaaatgatataatttagtgtaatcatatgagtcagt 516  Q
    |||||||||||||| | |||||| |||||||||||||| ||||||    
T  12611977 taatttgaaaaaatcacataattgagtgtaatcatatgtgtcagt 12612021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 17754306 - 17754374
Alignment:
Q  456 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    |||| |||| || ||||||||||||||||| | |||||| |||||||  ||||| |||||||| |||||    
T  17754306 acaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtc 17754374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 18513305 - 18513237
Alignment:
Q  456 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    |||| |||| |||||||||||||| ||||||| |||||| | |||||||||||| ||||||||||||||    
T  18513305 acacagacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtc 18513237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 517
Target Start/End: Complemental strand, 44081633 - 44081580
Alignment:
Q  464 atcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtg 517  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||| |||||||    
T  44081633 atcgttaataatttgaaaaaatcatataatttaatgtaattatatgtgtcagtg 44081580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 49659573 - 49659536
Alignment:
Q  470 aataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||| |||||||||||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcata 49659536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 3144705 - 3144665
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  3144705 gataataatttcagaaaatgatataatttagtgtaatcata 3144665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 16303319 - 16303283
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16303319 gataatattttgaaaaaatgatataatttagtgtaat 16303283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 504
Target Start/End: Complemental strand, 50848355 - 50848319
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatc 504  Q
    ||||||||||||||||||||||||||| |||||||||    
T  50848355 ataataatttgaaaaaatgatataattcagtgtaatc 50848319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 37203272 - 37203306
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||||||||| |||||||||||||||    
T  37203272 taataatttgaaaaaatgacataatttagtgtaat 37203306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Original strand, 6273953 - 6273986
Alignment:
Q  470 aataatttgaaaaaatgatataatttagtgtaat 503  Q
    |||||||||| |||||||||||||||||||||||    
T  6273953 aataatttgagaaaatgatataatttagtgtaat 6273986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 509
Target Start/End: Complemental strand, 999407 - 999359
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||||| |||||||||||  |||| ||||||||||||||||| |||||    
T  999407 gacatcgctaataatttgagtaaatcatataatttagtgtaattatatg 999359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 20119950 - 20120002
Alignment:
Q  466 cgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    |||||||||||||| ||||||| |||||||| |||||||| ||| || |||||    
T  20119950 cgataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgt 20120002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 20743331 - 20743291
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  20743331 gataataatttgagaaaatgacataattcagtgtaatcata 20743291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 507
Target Start/End: Original strand, 23386164 - 23386192
Alignment:
Q  479 aaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||||||||||||||||||||    
T  23386164 aaaaaatgatataatttagtgtaatcata 23386192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 504
Target Start/End: Complemental strand, 47191057 - 47191009
Alignment:
Q  456 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatc 504  Q
    |||| ||||| ||||||||||||  ||||||| ||||||||||||||||    
T  47191057 acaccgacatggataataatttgcgaaaatgacataatttagtgtaatc 47191009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 15864839 - 15864879
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15864839 gataataatttgaaaaaatgatataatttagtgtaatcata 15864879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 518
Target Start/End: Complemental strand, 40150625 - 40150573
Alignment:
Q  466 cgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    |||||||||||||| |||||||||||||| | |||||||||||| ||| ||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgt 40150573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 20691325 - 20691376
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| ||| ||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgt 20691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 507
Target Start/End: Original strand, 25074789 - 25074835
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||| |||||||||||||| ||||||| |||||| ||||||||||||    
T  25074789 gacaccgataataatttgagaaaatgacataattgagtgtaatcata 25074835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 518
Target Start/End: Complemental strand, 49505205 - 49505156
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    ||||||||||| ||||| | ||||||||||||||| ||||| ||||||||    
T  49505205 taataatttgagaaaatcacataatttagtgtaattatatgtgtcagtgt 49505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 8164194 - 8164138
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtca 525  Q
    ||||||||||||||||| || || ||||||||||||| |||  |||||| |||||||    
T  8164194 taataatttgaaaaaatcatgtattttagtgtaatcacatgtatcagtgatgtgtca 8164138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 12704710 - 12704670
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  12704710 gataataatttgaaaaaatgacataattcaatgtaatcata 12704670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 14223906 - 14223866
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  14223906 gataataatttgagaaaacgatataatttagtgtattcata 14223866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 503
Target Start/End: Original strand, 25326432 - 25326468
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  25326432 gataataatttaaaaaaataatataatttagtgtaat 25326468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 27903638 - 27903678
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||| ||||||||||| ||||||||||    
T  27903638 gataataatttgagaaaacgatataatttaatgtaatcata 27903678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 29508452 - 29508492
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||||||||||||||| |||||||| |||||||| |||||    
T  29508452 taataatttgaaaaaatcatataattcagtgtaattatatg 29508492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 23751906 - 23751946
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23751906 gataataatttgataaaatgatataatttagtgtaatcata 23751946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 507
Target Start/End: Complemental strand, 29812716 - 29812677
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcata 29812677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 506
Target Start/End: Complemental strand, 46644739 - 46644701
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcat 506  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  46644739 ataataatttgaaaaaattatataatttagtgtaatcat 46644701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 4017847 - 4017807
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  4017847 gataataatttgagaaaacgatataatttagtgtaatcata 4017807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 524
Target Start/End: Original strand, 15902829 - 15902885
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    |||||||||||| ||||| | ||||||||||||||| ||||| ||| ||||||||||    
T  15902829 ataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtc 15902885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 23128722 - 23128658
Alignment:
Q  459 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgt 523  Q
    |||||| | |||||||||||| ||||  |||||||| |||||||||||||| ||| |||||||||    
T  23128722 ctgacaccaataataatttgagaaaaccatataattcagtgtaatcatatgtgtcggtgttgtgt 23128658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 11831440 - 11831474
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||||||| |||||||||||||||||    
T  11831440 taataatttgaaaaaatcatataatttagtgtaat 11831474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 507
Target Start/End: Original strand, 13427585 - 13427622
Alignment:
Q  470 aataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  13427585 aataatttgaaaaaatgacataatttagtataatcata 13427622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 38134466 - 38134417
Alignment:
Q  460 tgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||| |||||||||||||| ||||||| |||||| | ||||||||||||    
T  38134466 tgacaccgataataatttgagaaaatgacataattcaatgtaatcatatg 38134417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 519
Target Start/End: Complemental strand, 46550836 - 46550792
Alignment:
Q  475 tttgaaaaaatgatataatttagtgtaatcatatgagtcagtgtt 519  Q
    ||||||||||||| |||||| |||||||||| ||| |||||||||    
T  46550836 tttgaaaaaatgacataattgagtgtaatcacatgtgtcagtgtt 46550792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 6389749 - 6389789
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  6389749 gataataatttgagaaaatgatataatttagtgtaatcata 6389789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 10842540 - 10842580
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  10842540 taataatttgaaaaaatcacataatttagtgtaatcatatg 10842580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 17168516 - 17168480
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||| |||||||||||||||||||||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaat 17168480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 19602234 - 19602194
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcata 19602194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 523
Target Start/End: Original strand, 28862121 - 28862184
Alignment:
Q  461 gacatcgataataatttgaaaaaatgata-taatttagtgtaatcatatgagtcagtgttgtgt 523  Q
    ||||||||||||||||||| ||||||| | ||||| |||||||||||||| ||| |||| ||||    
T  28862121 gacatcgataataatttgataaaatgacattaattcagtgtaatcatatgtgtcggtgtcgtgt 28862184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 7938124 - 7938158
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||||||| |||||||||||||||||    
T  7938124 taataatttgaaaaaatcatataatttagtgtaat 7938158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 523
Target Start/End: Complemental strand, 9195805 - 9195751
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgt 523  Q
    ||||||||||| ||||||| ||||||||||||||| ||||| ||| |||| ||||    
T  9195805 taataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgt 9195751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 7086803 - 7086864
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtcaaacac 530  Q
    ||||||||||| ||||| | ||||||||||||||| ||||| ||| |||| |||||| ||||    
T  7086803 taataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtcagacac 7086864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 524
Target Start/End: Complemental strand, 9024225 - 9024172
Alignment:
Q  471 ataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    ||||||||| ||||||| |||||| | |||||||||||| |||||||| |||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtc 9024172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 13364754 - 13364705
Alignment:
Q  471 ataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttg 520  Q
    ||||||||| ||||| |||||||| |||||||||||||| ||| ||||||    
T  13364754 ataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttg 13364705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 503
Target Start/End: Complemental strand, 18252805 - 18252768
Alignment:
Q  466 cgataataatttgaaaaaatgatataatttagtgtaat 503  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  18252805 cgataataatttaaaaaaatgacataatttagtgtaat 18252768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 518
Target Start/End: Complemental strand, 26178732 - 26178683
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    ||||||||||| ||||| | ||||||||||||||||||||| ||| ||||    
T  26178732 taataatttgataaaatcacataatttagtgtaatcatatgtgtcggtgt 26178683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 503
Target Start/End: Original strand, 7625128 - 7625164
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  7625128 gataataatttgagaaaatgatataatttagtataat 7625164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 34446571 - 34446611
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  34446571 gataataatttgagaaaatgacataattcagtgtaatcata 34446611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 509
Target Start/End: Complemental strand, 2577239 - 2577191
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  2577239 gacaccgataataatttgagaaaatgacataatttagtgtaatcatatg 2577191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 4344740 - 4344787
Alignment:
Q  459 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcat 506  Q
    |||||| |||||||||||||||||||||| |||||| |||||||||||    
T  4344740 ctgacaccgataataatttgaaaaaatgacataattcagtgtaatcat 4344787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 456 - 507
Target Start/End: Complemental strand, 39696063 - 39696012
Alignment:
Q  456 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||| |||| ||| |||||||||| |||||||||||||||||||||||||||    
T  39696063 acaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcata 39696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 507
Target Start/End: Original strand, 43554528 - 43554567
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcata 43554567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 12927649 - 12927711
Alignment:
Q  456 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    |||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||||  ||||||||    
T  12927649 acaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgtcagtgt 12927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 16881143 - 16881184
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  16881143 ataataatttgaaaaaatgacataatttaatgtaatcatatg 16881184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 518
Target Start/End: Complemental strand, 32630796 - 32630737
Alignment:
Q  459 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    |||||| |||||||||||||| ||||| |||||||| | |||||| ||||| ||||||||    
T  32630796 ctgacaccgataataatttgagaaaattatataattcaatgtaattatatgtgtcagtgt 32630737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 524
Target Start/End: Complemental strand, 38749622 - 38749559
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    |||| |||||||||||||||||||||| |||||| | |||||| ||||| ||  ||||||||||    
T  38749622 gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtc 38749559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 24906354 - 24906318
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  24906354 gataataatttgaaaaaatgacataattcagtgtaat 24906318  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 42469227 - 42469267
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| ||||||| ||| |||||||||||||||    
T  42469227 gataataatttgagaaaatgacatattttagtgtaatcata 42469267  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 43208328 - 43208264
Alignment:
Q  466 cgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtcaaacac 530  Q
    ||||| |||||||| ||||||| |||||| | |||||||||||  ||| ||||||||||| ||||    
T  43208328 cgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtcagacac 43208264  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 23354705 - 23354665
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcata 23354665  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 507
Target Start/End: Original strand, 24011036 - 24011082
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  24011036 gacattgataataatttgagaaaatgacataatttagtgtaatcata 24011082  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 18570977 - 18571029
Alignment:
Q  466 cgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    |||||||||||||| ||||||| |||||| | |||||||||||| ||||||||    
T  18570977 cgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18571029  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 23355048 - 23355008
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  23355048 gataataatttgagaaaatgatataatttagtgcaatcata 23355008  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 37986785 - 37986825
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  37986785 gataataatttgaaaaaatgatatatttgagtgtaatcata 37986825  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 507
Target Start/End: Original strand, 25544488 - 25544527
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcata 25544527  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 507
Target Start/End: Complemental strand, 10535818 - 10535772
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||| |||||||||||||| ||||||| |||||| ||||||||||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaatcata 10535772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 503
Target Start/End: Complemental strand, 20539725 - 20539691
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||||||| |||||||||||||||||    
T  20539725 taataatttgaaaaaatcatataatttagtgtaat 20539691  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 30335425 - 30335459
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||||||||||||||||| |||||||||||||||    
T  30335425 taataatttgaaaaaatgacataatttagtgtaat 30335459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 2423881 - 2423926
Alignment:
Q  473 aatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 518  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  2423881 aatttgagaaaatcatataatttagtataattatatgagtcagtgt 2423926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 507
Target Start/End: Complemental strand, 11308053 - 11308017
Alignment:
Q  471 ataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcata 11308017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 507
Target Start/End: Original strand, 12748682 - 12748730
Alignment:
Q  459 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||| ||||||||||||| ||||||| ||| || ||||||||||||    
T  12748682 ctgacatggataataatttgagaaaatgacatagttcagtgtaatcata 12748730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 509
Target Start/End: Complemental strand, 30527646 - 30527606
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  30527646 taataatttgagaaaatcatataatttagtgtaattatatg 30527606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 36281693 - 36281733
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  36281693 taataatttgagaaaatcacataatttagtgtaatcatatg 36281733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 38919212 - 38919252
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| |||||| |||| |||||||||||||||    
T  38919212 gataataatttgagaaaatgttatagtttagtgtaatcata 38919252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 507
Target Start/End: Original strand, 39820436 - 39820475
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcata 39820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 509
Target Start/End: Complemental strand, 12559157 - 12559117
Alignment:
Q  469 taataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  12559157 taataatttgagaaaatgatataattcagtgtaatcatatg 12559117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 507
Target Start/End: Original strand, 13845241 - 13845280
Alignment:
Q  468 ataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcata 13845280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 503
Target Start/End: Original strand, 20873069 - 20873111
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaat 503  Q
    ||||| ||||||||||||||||||| | |||||||||||||||    
T  20873069 gacatagataataatttgaaaaaatcacataatttagtgtaat 20873111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 507
Target Start/End: Original strand, 8017487 - 8017532
Alignment:
Q  462 acatcgataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    |||| ||||||||| ||||||||||| |||||| ||||||||||||    
T  8017487 acatagataataatatgaaaaaatgacataattgagtgtaatcata 8017532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 9936814 - 9936862
Alignment:
Q  461 gacatcgataataatttgaaaaaatgatataatttagtgtaatcatatg 509  Q
    ||||||||||||||||| | |||||||||||||| | | ||||||||||    
T  9936814 gacatcgataataatttaagaaaatgatataattcaatataatcatatg 9936862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 13009546 - 13009506
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  13009546 gataataatttgagaaaacaatataatttagtgtaatcata 13009506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 35431193 - 35431153
Alignment:
Q  467 gataataatttgaaaaaatgatataatttagtgtaatcata 507  Q
    ||||||||||||| ||||||| ||| |||||||||||||||    
T  35431193 gataataatttgagaaaatgacatattttagtgtaatcata 35431153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 524
Target Start/End: Original strand, 56932 - 56985
Alignment:
Q  471 ataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||| |||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgtcagtgtcgtgtc 56985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 503
Target Start/End: Original strand, 102906 - 102947
Alignment:
Q  462 acatcgataataatttgaaaaaatgatataatttagtgtaat 503  Q
    |||||||||||||||||| |||||||||||||| | ||||||    
T  102906 acatcgataataatttgagaaaatgatataattcaatgtaat 102947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 1030 - 1098
Alignment:
Q  456 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 524  Q
    |||| |||| || ||||||||||||||||| | |||||| |||||||  ||||| |||||||| |||||    
T  1030 acaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtc 1098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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