View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5036_high_2 (Length: 346)
Name: NF5036_high_2
Description: NF5036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5036_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 39296546 - 39296229
Alignment:
| Q |
18 |
aggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcg |
117 |
Q |
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| T |
39296546 |
aggaatcataatgagaattgtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaactaggctca |
39296447 |
T |
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| Q |
118 |
taacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaa |
217 |
Q |
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| T |
39296446 |
caacttactgttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaa |
39296347 |
T |
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| Q |
218 |
taagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgat |
317 |
Q |
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| T |
39296346 |
taaaaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgat |
39296247 |
T |
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| Q |
318 |
cgtgagaacaagagaata |
335 |
Q |
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| T |
39296246 |
cgtgagaacgagagaata |
39296229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 39289666 - 39289345
Alignment:
| Q |
18 |
aggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| || |
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| T |
39289666 |
aggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgataggtttttgaactaggttca |
39289567 |
T |
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| Q |
118 |
taacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaa |
217 |
Q |
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| T |
39289566 |
taacttatagtaagaagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaa |
39289467 |
T |
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| Q |
218 |
taagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgttttt |
314 |
Q |
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||| |||||||||| ||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| |||| |
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| T |
39289466 |
taactggaaaagctgcaagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgctttt |
39289367 |
T |
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| Q |
315 |
gatcgtgagaacaagagaataa |
336 |
Q |
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| T |
39289366 |
gatcgtgagtacgagagaataa |
39289345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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