View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5036_low_3 (Length: 228)
Name: NF5036_low_3
Description: NF5036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5036_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39295919 - 39296146
Alignment:
| Q |
1 |
tcaaggttgcacagtgtacaaaggactgttcttggtttgcataaccttgaatatgttagcacttgctctttcagttttagggcattttccatatggtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39295919 |
tcaaggttgcacagtgtacaaaggactgttcttggtttgcataaccttgaatatgttagcacttgctctttcagttttagggcattttccatatggtaaa |
39296018 |
T |
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| Q |
101 |
tcaagagctacacttttctccattggtaacattctagctttaacactatgtcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296019 |
tcaagagctacacttttctccattggtaacatcctagctttaacactatgtcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaacta |
39296118 |
T |
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| Q |
201 |
tagggaatccttgtgtttctcttagaat |
228 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
39296119 |
tagggaaaccttgtgtttctcttagaat |
39296146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39289036 - 39289263
Alignment:
| Q |
1 |
tcaaggttgcacagtgtacaaaggactgttcttggtttgcataaccttgaatatgttagcacttgctctttcagttttagggcattttccatatggtaaa |
100 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39289036 |
tcaaggtttcacagtttacaaaggactattcttggtttgcataaccttgaatatgttagcacttgctctttcagctttagggcattttccatatggtaaa |
39289135 |
T |
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| Q |
101 |
tcaagagctacacttttctccattggtaacattctagctttaacactatgtcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39289136 |
tcaagagctacacttttctccattggtaacattctagctttaacactatgtcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaacta |
39289235 |
T |
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| Q |
201 |
tagggaatccttgtgtttctcttagaat |
228 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
39289236 |
tagggaagccttgtgtttctcttagaat |
39289263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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