View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5037-Insertion-2 (Length: 870)
Name: NF5037-Insertion-2
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 33468971 - 33468546
Alignment:
| Q |
8 |
ttactaatatgagcttgatttgaaaatggggttggtctaaagggttgtcaagagctttctgtaaggaaaagaaagagtcttgttttacttttcaattcta |
107 |
Q |
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| T |
33468971 |
ttactaatatgagcttgatttgaaaatggggttggtctaaagggttgtcaagagctttctgtaaggaaaagaaagagtcttgttttacttttcaattcta |
33468872 |
T |
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| Q |
108 |
tattgaaaaattggtatttcccccatctcatggggggtttctgtaatttttgaaaattattcatctttggagtgtgctgtgctggattttgatgtgaagt |
207 |
Q |
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| T |
33468871 |
tattgaaaaattggtatttcccccatctcatggggggtttctgtaatttttgaaaattattcatctttggagtgtgctgtgctggattttgatgtgaagt |
33468772 |
T |
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| Q |
208 |
gaggaaccaccaggttcatttggggtttctgacaaatttctatttgttaacaagttgtatcgttattttagtcttagccttctggttattgggggaaaga |
307 |
Q |
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| T |
33468771 |
ggggaaccaccaggttcatttggggtttctgacaaatttctatttgttaacaagttgtattgttattttagtcttagccttctggttattgggggaaaga |
33468672 |
T |
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| Q |
308 |
gactttggtaatctgcaattcgaccaagagttttgaagagattggaaatactagaagcttcaatttggtctctatatatggtcccttgtttagttgtatc |
407 |
Q |
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| T |
33468671 |
gactttggtaatctgcaattcgagcaagagttgtgaagagat---------tagaagcttcaatttggtctctatatatggtcccttgtttagttgtatc |
33468581 |
T |
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| Q |
408 |
attgtttctaagttaggtatcaggatcactaatca |
442 |
Q |
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| T |
33468580 |
tttatttctaaattaggaatcagaatcactgatca |
33468546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 476 - 870
Target Start/End: Complemental strand, 33468542 - 33468149
Alignment:
| Q |
476 |
gtctcactgataagtcataggttgactccaaatgttgtattatgatttcggtttgtaaagttttcaaatttgatctcgaatgagacccttattttaagtc |
575 |
Q |
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| T |
33468542 |
gtctcactaataagtcataggttgactc-aaatgttgtatcatgatttctgtttgtaaagctttcaaatttgacgaggaatgagacacttattttaagtc |
33468444 |
T |
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| Q |
576 |
aattaagtatatgtttggtttggcgttcatctactctttctcgcattccaaggaagttccaccgtgaatatataaaaattgttacttcaaggtggacgcg |
675 |
Q |
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| T |
33468443 |
aattaagtatacgtttggtttagctttcatctattctttctcgaattccaaggagtttcagctgtgaatatataaaaattgttgcttcaaggtggatgcg |
33468344 |
T |
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| Q |
676 |
cattaagttgaattccactgtcgaaacaaaaattggccaagttgccttagattttttaaggcaattagtcatatataaggtttggactgtggttttggat |
775 |
Q |
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| T |
33468343 |
cattaagttgaattctactgtcaaaacaaaaattggccaagttgccttagattttttaaggcaattcgtcatatataaggttcggactgtggttttggat |
33468244 |
T |
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| Q |
776 |
acttcaagatggcagaaactgtaaaagagccaaggtcattggccttgacacctacctggtctgtcgccactgtgttgaccatctttgttgccgtc |
870 |
Q |
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| T |
33468243 |
acttcaagatggcagaaactgtaaaagaaccaaggtcattggccttgactcctacctggtccgtcgccactgtgttgaccatctttgttgccgtc |
33468149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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