View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5037-Insertion-3 (Length: 716)
Name: NF5037-Insertion-3
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 110 - 330
Target Start/End: Original strand, 29750824 - 29751044
Alignment:
| Q |
110 |
attggaaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagt |
209 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29750824 |
attgggaaagaaattgttcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagt |
29750923 |
T |
|
| Q |
210 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcatgctctcaaattaagttttgatcaattaccgtcttatttgaaacg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |
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|
| T |
29750924 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctctcaaattaagttttgatcaattaccctcatatttaaaacg |
29751023 |
T |
|
| Q |
310 |
atgttttgcctgcttctccct |
330 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29751024 |
atgttttgcctgcttctccct |
29751044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 110 - 330
Target Start/End: Original strand, 29743787 - 29744011
Alignment:
| Q |
110 |
attggaaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaa----aagatgatattgaagagtgg |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
29743787 |
attgggaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaattaaaagatgatattgaagagtgg |
29743886 |
T |
|
| Q |
206 |
aagtttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcatgctctcaaattaagttttgatcaattaccgtcttatttga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
29743887 |
aagtttgttagggacaatgagatttggaatttaccacaaaaaaaagatgatattttgcctgctatcaaattaagttttgatcaattaccgtcttatttga |
29743986 |
T |
|
| Q |
306 |
aacgatgttttgcctgcttctccct |
330 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29743987 |
aacgatgttttgcctgcttctccct |
29744011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 110 - 330
Target Start/End: Complemental strand, 29602470 - 29602250
Alignment:
| Q |
110 |
attggaaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagt |
209 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
29602470 |
attgggaaagaaattgttcaaaaatgtggagggcttcctttggccctaagaacattggggagtttattgttcttaaaagatgatatagaagagtggaagt |
29602371 |
T |
|
| Q |
210 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcatgctctcaaattaagttttgatcaattaccgtcttatttgaaacg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
29602370 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctatcaaattaagttttgatcaattaccatcttatttaaaacg |
29602271 |
T |
|
| Q |
310 |
atgttttgcctgcttctccct |
330 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29602270 |
atgttttgcctgcttctccct |
29602250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 29597229 - 29597158
Alignment:
| Q |
8 |
ctactagtatatcaaagttaaactaaataaatattttacgtagacaa-gcaatgcaaccatatgtttgctta |
78 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||| |
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|
| T |
29597229 |
ctacaagtatatcaaagttaaactaaataaatattttacacacacaatgcaatgcaaccatttgtttgctta |
29597158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 29753335 - 29753373
Alignment:
| Q |
8 |
ctactagtatatcaaagttaaactaaataaatattttac |
46 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29753335 |
ctactagtatatcaaagctaaactaaataaatattttac |
29753373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 110 - 327
Target Start/End: Original strand, 49352432 - 49352649
Alignment:
| Q |
110 |
attggaaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagt |
209 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||| ||||||||||||||| |
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|
| T |
49352432 |
attgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagt |
49352531 |
T |
|
| Q |
210 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcatgctctcaaattaagttttgatcaattaccgtcttatttgaaacg |
309 |
Q |
| |
|
|| | || |||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||| ||||| |||||||| |||| |
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|
| T |
49352532 |
ttatcagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaaca |
49352631 |
T |
|
| Q |
310 |
atgttttgcctgcttctc |
327 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
49352632 |
atgttttgcttgcttctc |
49352649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 110 - 327
Target Start/End: Original strand, 49341056 - 49341271
Alignment:
| Q |
110 |
attggaaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagt |
209 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
49341056 |
attgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacattggggagttctctattcttaaaagatgatatagaagagtggaagt |
49341155 |
T |
|
| Q |
210 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcatgctctcaaattaagttttgatcaattaccgtcttatttgaaacg |
309 |
Q |
| |
|
|| ||||||| ||| |||||| |||||||||||||||| || || |||||| |||| ||||| ||||| |||||| ||||| |||||||| |||| |
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|
| T |
49341156 |
ttaacagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgtctgctatcaaa--aagttatgatcagttaccttcttatttaaaaca |
49341253 |
T |
|
| Q |
310 |
atgttttgcctgcttctc |
327 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
49341254 |
atgttttgcttgcttctc |
49341271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 110 - 330
Target Start/End: Original strand, 35157942 - 35158162
Alignment:
| Q |
110 |
attggaaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagt |
209 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||| |
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|
| T |
35157942 |
attggaaaagatattgtgcttaaatgtggagggcttccattggccctaaggacattggggagttcgctgttcttaaaagttgatatacaagagtggaagt |
35158041 |
T |
|
| Q |
210 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcatgctctcaaattaagttttgatcaattaccgtcttatttgaaacg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || || ||||| | || |||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
35158042 |
ttgttagggacaatgagatttggaatttaccgcaaaaagacgaggacattttaccagcaatcaaattaagttatgatcaattaccttcttatttaaaaca |
35158141 |
T |
|
| Q |
310 |
atgttttgcctgcttctccct |
330 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
35158142 |
gtgttttgcttgcttctccct |
35158162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 110 - 330
Target Start/End: Complemental strand, 32783837 - 32783617
Alignment:
| Q |
110 |
attggaaaagaaattgtgcaaaaatgtggagggcttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagt |
209 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||| |||| | ||||||||||||| |
|
|
| T |
32783837 |
attgggaaagaaattgtacaaaaatgtggagggcttcctttggccctaagaacatcggggagttctctattcctaaaagttgatgtggaagagtggaagt |
32783738 |
T |
|
| Q |
210 |
ttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcatgctctcaaattaagttttgatcaattaccgtcttatttgaaacg |
309 |
Q |
| |
|
|| | || |||| ||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
32783737 |
ttatcagagacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttacgatcagttaccttcttatttaaaacg |
32783638 |
T |
|
| Q |
310 |
atgttttgcctgcttctccct |
330 |
Q |
| |
|
||||||| | ||||||||||| |
|
|
| T |
32783637 |
atgttttacttgcttctccct |
32783617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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