View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5037-Insertion-5 (Length: 516)
Name: NF5037-Insertion-5
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Complemental strand, 6381332 - 6380885
Alignment:
| Q |
7 |
aattttatacaatcaaaaaattaa-tgtcgaacttgttctctatccgctttatccttaagaacaacaaacatgtccttaaaagtaagcttatcaacaaaa |
105 |
Q |
| |
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|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6381332 |
aattttatccaatcaaagaattaaatgtcgaacttgttctctatccgctttatccttaagaacaacaaacatgtcattaaaagtaagcttatcaacaaaa |
6381233 |
T |
|
| Q |
106 |
gaacccataaccaagttcatatgattaacccaatcaaccttctcagcaagagcacaaaccttaattgcagcaatcacatgttttccatctgagaatagga |
205 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6381232 |
gaacccataaccaagttcatatgattaaccccatcaaccttctcagcatgagcacaaaccttaattgcagcaatcacatgttttccatctgagaatagga |
6381133 |
T |
|
| Q |
206 |
acgagtgttgcttcatggaaggggttgtaactgtgaatggggataatggggttcttcttctttgtgtttattttgtggggtagcagtggtgaatagaata |
305 |
Q |
| |
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| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6381132 |
atgagtgttgcttcgtgggatgggttgtaactgtgaatggggataatggggttcttcttctttgtgtttattttgtggggtagcagtggtgaatagaata |
6381033 |
T |
|
| Q |
306 |
ggaacgaggaaaggttgctagtggtgggtgagagagacatggaggcgagaatggttggcgaagatggtgtgaaaaaatatagtgttaaaagaacatggta |
405 |
Q |
| |
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|| |||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6381032 |
gggacgaggaagagttgctggtggtgggtgagagagacatggaggagagaa-ggttggcgaagatggtgtgaaaaaatctagtgttaaaagaacatggta |
6380934 |
T |
|
| Q |
406 |
agatagtgttcttcatttaatcaaacctttaaatctatttttcctatga |
454 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6380933 |
agacggtgttcttcatttaatcaaacctttaaatctatctttcctatga |
6380885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 455 - 516
Target Start/End: Complemental strand, 6380863 - 6380801
Alignment:
| Q |
455 |
catgttaaatgccaccaacaaatattacctttatgg-taagtcatttgcaattagtatttcca |
516 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
6380863 |
catgtgaaatgccaccaacaaataatacctttatggttaagtcatttgcaattagtatttcca |
6380801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 35107513 - 35107591
Alignment:
| Q |
352 |
gagaatggttggcgaagatggtgtgaaaaaatatagtgttaaaagaacatggtaagatagtgttcttcatttaatcaaa |
430 |
Q |
| |
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|||||||||||| ||| | ||| |||||||| ||||||| | || ||||||||||| ||||||||||||| |||||| |
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|
| T |
35107513 |
gagaatggttggggaataaagtgagaaaaaattcagtgttagaggagcatggtaagattgtgttcttcatttgatcaaa |
35107591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 453
Target Start/End: Complemental strand, 46187633 - 46187186
Alignment:
| Q |
8 |
attttatacaatcaaaaaattaa-tgtcgaacttgttctctatccgctttatccttaagaacaacaaacatgtccttaaaagtaagcttatcaacaaaag |
106 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187633 |
attttatccaatcaaagaattaaatgtcgaacttgttctctttcttctttatccttaagaacaacaaacatgtccttaaaagtaagcttatcaacaaaag |
46187534 |
T |
|
| Q |
107 |
aacccataaccaagttcatatgattaacccaatcaaccttctcagcaagagcacaaaccttaattgcagcaatcacatgttttccatctgagaataggaa |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46187533 |
aacccataaccaagctcatatgattaaccccatcaagcttctcagcaagagcacaaaccttaattgcagcaatcacatgttttccatctgagaataggaa |
46187434 |
T |
|
| Q |
207 |
cgagtgttgcttcatggaaggggttgtaactgtgaatggggataatggggttcttcttctttgtgtttattttgtggggtagcagtggtgaatagaatag |
306 |
Q |
| |
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||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
46187433 |
cgagtgttgcttcgtgggaggggctgtaactgtgaattgggataatggggttcttcttctttgtgtttattttgcggggtagcagtggtgaatagaatag |
46187334 |
T |
|
| Q |
307 |
gaacgaggaaaggttgctagtggtgggtgagagagacatggaggcgagaatggttggcgaagatggtgtgaa-aaaatatagtgttaaaagaacatggta |
405 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
46187333 |
gaacgaggaagagttgctggtggtgggtgagagagacatggaggagagaatggttagggaagatggtgtgaaaaaaatctagtgttaaaagaacatggta |
46187234 |
T |
|
| Q |
406 |
agatagtgttcttcatttaatcaaacctttaaatctatttttcctatg |
453 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
46187233 |
agagagtgttcttcatttaatcaaacttttaaatctatctttcctatg |
46187186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 430
Target Start/End: Complemental strand, 49162030 - 49161929
Alignment:
| Q |
325 |
agtggtgggtgagagagacatggaggcgagaatggttggcgaagatggtgtgaaaaaatatagtgttaaaagaacatggtaagatagtgttcttcattta |
424 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||| | ||||||| ||| || ||| ||||| ||| |
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| T |
49162030 |
agtgttgggtgagagag---tggagg-gagaatggttggagaagatattgtgaaaaaatatagtgttgagggaacatgttaatattgtggtcttcttttg |
49161935 |
T |
|
| Q |
425 |
atcaaa |
430 |
Q |
| |
|
|||||| |
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|
| T |
49161934 |
atcaaa |
49161929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 31167841 - 31167764
Alignment:
| Q |
353 |
agaatggttggcgaagatggtgtgaaaaaatatagtgttaaaagaacatggtaagatagtgttcttcatttaatcaaa |
430 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| | ||||||| ||| || ||| ||||| ||| |||||| |
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|
| T |
31167841 |
agaatggttggagaagatattgtgaaaaaatatagtgttgagggaacatgttaatattgtggtcttcttttgatcaaa |
31167764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Complemental strand, 29148647 - 29148199
Alignment:
| Q |
7 |
aattttatacaatcaaaaaattaa-tgtcgaacttgttctctatccgctttatccttaagaacaacaaacatgtccttaaaagtaagcttatcaacaaaa |
105 |
Q |
| |
|
|||||||| |||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29148647 |
aattttatccaatcaaagaattaaatgttgaacttgatctctatctgctttatccttaagaacaacaaacatgtccttaaaagtaagcttatcaacaaaa |
29148548 |
T |
|
| Q |
106 |
gaacccataaccaagttcatatgattaacccaatcaaccttctcagcaagagcacaaaccttaattgcagcaatcacatgttttccatctgagaatagga |
205 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29148547 |
gaacccataatcaagttcatatgattaaccccatcaaccttctcagcaagagcacaaaccttaattgcaccaatcacatgttttccatctgagaatagga |
29148448 |
T |
|
| Q |
206 |
acgagtgttgcttcatggaaggggttgtaactgtgaatggggataatggggttcttcttctttgtgtttattttgtggggtagcagtggtgaatagaata |
305 |
Q |
| |
|
|||| ||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
29148447 |
acgattgttgcttcgtgggaggggctgtaattgtgaatggggataatggggttcttcttctttatgtttattttgtggggtagcagtggtgaatagaata |
29148348 |
T |
|
| Q |
306 |
ggaacgaggaaaggttgctagtggtgggtgagagagacatggaggcgagaatggttggcgaagatggtgtgaaaaaatatagtgttaaaagaacatggta |
405 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
29148347 |
ggaacgaggaagagttgcaggtggtgggtgagagagacatggaggagagaatggttggggaagatggtgtgaaaaaatcaagtgttaaaagaacatggta |
29148248 |
T |
|
| Q |
406 |
agatagtgttcttcatttaatcaaacctttaaatctatttttcctatga |
454 |
Q |
| |
|
||| | |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
29148247 |
agacaatgttcttcatttaatcaaacatttaaatctatctttcctatga |
29148199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 19130310 - 19130388
Alignment:
| Q |
352 |
gagaatggttggcgaagatggtgtgaaaaaatatagtgttaaaagaacatggtaagatagtgttcttcatttaatcaaa |
430 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| ||||||| | || |||| |||||| |||||||||||||||||||| |
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|
| T |
19130310 |
gagaatggttggggaagaaagtgagaaaaaattcagtgttagaggagcatgataagattgtgttcttcatttaatcaaa |
19130388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 40912801 - 40912879
Alignment:
| Q |
352 |
gagaatggttggcgaagatggtgtgaaaaaatatagtgttaaaagaacatggtaagatagtgttcttcatttaatcaaa |
430 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| || ||||||| || |||| |||||| |||||||| ||||||||||| |
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|
| T |
40912801 |
gagaatggttggggaagaaagtgagaaaaaatctaatgttaaaggagcatgataagattgtgttctttatttaatcaaa |
40912879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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