View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5037-Insertion-6 (Length: 372)
Name: NF5037-Insertion-6
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 28768227 - 28767989
Alignment:
| Q |
8 |
catacaatttgaaaaatggggaccaaaatttcaaatttgaatttaggggaccaaattgtaaattagatgaattaaattaaaagtgccnnnnnnngtattt |
107 |
Q |
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| T |
28768227 |
catacaagttgaaaaatgaggaccaaaattgcaaatttgaatttaggggaccaaattgtaaattagattaattaaa------gggccaaaaaaagtattt |
28768134 |
T |
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| Q |
108 |
aagccaaaatacataaattagtgaaa-gttgaaatttgtgttcacctcagggaaactccacaagataccccatactagaaacagccttgaactaatctga |
206 |
Q |
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| T |
28768133 |
aagccaaaatacataaataagtaaaaagttgaaatttgtgttcacctcagggaaactccacaagataccccatactagaaacagccttgaactaatctga |
28768034 |
T |
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| Q |
207 |
ggcaatgttgctgatattggagacctcacaatcccttcatcaatt |
251 |
Q |
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| T |
28768033 |
ggcaatgttgctgatattggagacctcacaatcccttcatcaatt |
28767989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 28767938 - 28767868
Alignment:
| Q |
302 |
tctacattaagcatttaatcaatggattactcaccaactaaaccatgaagaatctatcacaccatgcaata |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28767938 |
tctacattaagcatttaatcaatggattactcaccaactaaaccatgaagaatctatcacaccatgcaata |
28767868 |
T |
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