View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5037_high_1 (Length: 429)
Name: NF5037_high_1
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 2480387 - 2479986
Alignment:
| Q |
13 |
attctcacataggagtctggcaaaaaggagcaggatcacattctgactctaattggatcttaagggtggagcttggnnnnnnncatgaagatagtcatga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2480387 |
attctcacataggagtctggcaaaaaggagcaggatcacattctgactctaattggatcttaagggtggagcttggaaagaaacatgaagatagtcatga |
2480288 |
T |
|
| Q |
113 |
atcaaattatgtgtcatcatcagaaaaatcagcacctaataatagtacaattgttggtgattgtgctgagaaaaatgggatagaacatgaagaggatatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480287 |
atcaaattatgtgtcatcatcagaaaaatcagcacctaataatagtacaattgttggtgattgtgctgagaaaaatgggatagaacatgaagaggatatt |
2480188 |
T |
|
| Q |
213 |
gttaccatgcagatgattgaagagctacttaattgaaacttcaagtaaccttcaggagtctgatgttacttctataatatataatattaataacatacta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480187 |
gttaccatgcagatgattgaagagctacttaattgaaacttcaagtaaccttcaggagtctgatgttacttctataatatataatattaataacatacta |
2480088 |
T |
|
| Q |
313 |
ttgtactgtataaaagaactcctttttaggttactctcaaatcaatttgtcttcaaagaactccttttcacttacagtatgaaacacttttgtggaccat |
412 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480087 |
ttgtactgtattaaagaactcctttttaggttactctgaaatcaatttgtcttcaaagaactccttttcacttacagtatgaaacacttttgtggaccat |
2479988 |
T |
|
| Q |
413 |
at |
414 |
Q |
| |
|
|| |
|
|
| T |
2479987 |
at |
2479986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University