View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5037_high_4 (Length: 282)
Name: NF5037_high_4
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 29478568 - 29478305
Alignment:
| Q |
7 |
tgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttatgttgaggtggtggtgg |
106 |
Q |
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| T |
29478568 |
tgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctgtttaggtggtggtgg |
29478469 |
T |
|
| Q |
107 |
tgaatgatctaatgtggtgttggtggttttcgattcggcaccggagttgaaaaagagtctgagattgctgaaaaagttagtgaggctgtgaagaaggttg |
206 |
Q |
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|||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29478468 |
tgaatgatctgatgtggtgttggtggtttgtgattcggcatcggtgttgaaaaagaatctgagattgctgaaaaagttagtgaggctgtgaagaaggttg |
29478369 |
T |
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| Q |
207 |
ttgaagagagtgagaaaatgaaggtgattgagacagagatgtgatgttgttagtgttgttgttg |
270 |
Q |
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| T |
29478368 |
ttgaagagagtgagaaaatgaaggtgattgagacagagatgtgatgttgttagtgttgttgttg |
29478305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 44231174 - 44231437
Alignment:
| Q |
7 |
tgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttatgttgaggtggtggtgg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44231174 |
tgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctgttgaggtggtggtgg |
44231273 |
T |
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| Q |
107 |
tgaatgatctaatgtggtgttggtggttttcgattcggcaccggagttgaaaaagagtctgagattgctgaaaaagttagtgaggctgtgaagaaggttg |
206 |
Q |
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| T |
44231274 |
tgaatgatctgacgtggtgttggtggtttttgattcggcaccggtgttgaaaaagaatctcagattgctgaaaaagttagtgaggctgtgaagaagattg |
44231373 |
T |
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| Q |
207 |
ttgaagagagtgagaaaatgaaggtgattgagacagagatgtgatgttgttagtgttgttgttg |
270 |
Q |
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| T |
44231374 |
ttgaagagagtgagaaaatgaaggtgattgaaacagagatgtgatgttgttagtgttgttgttg |
44231437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18820058 - 18820293
Alignment:
| Q |
1 |
acagcgtgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttatgttgaggtgg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
18820058 |
acagcatgaacaggaagaggaacagaagttaaaaacgcagcaaaaacacatcatgaacagaagctaaaaa-tccaagatctgagagttctgttgaggtgg |
18820156 |
T |
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| Q |
101 |
tggtggtgaatgatctaatgtggtgttggtggttttcgattcggcaccggagttgaaaaagagtctgagattgctgaaaaagttagtgaggctgtgaaga |
200 |
Q |
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||||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18820157 |
tggtggtgaatgaactgatgtggtgttggtggtttttgattcggcaccggtgttgaaaaagagtctgagattgctgaaaaagttagtgaggccgtgaaga |
18820256 |
T |
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| Q |
201 |
aggttgttgaagagagtgagaaaatgaaggtgattga |
237 |
Q |
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||||||||||||||| | ||||||||||||||||||| |
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| T |
18820257 |
aggttgttgaagagattcagaaaatgaaggtgattga |
18820293 |
T |
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Back To:
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