View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5037_high_5 (Length: 234)
Name: NF5037_high_5
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39536578 - 39536361
Alignment:
| Q |
1 |
tggtatctctttttcagaatgattgccactatccatttccttaccacaatcttctcagctaaaatattttccctttggcttagatcgaagagttaaatcg |
100 |
Q |
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| T |
39536578 |
tggtatctctttttcagaatgattgccactatccattttcttaccacaatcttcgcagctaaaatattttccctttggcttagatcgaagagtgaaatcg |
39536479 |
T |
|
| Q |
101 |
tgcttcttaaaacaagtttccatagtatgaccacagtaaaattcaaacaaaattctaagaatcattaaccaaacttagtattgaaaaatcatgttcttaa |
200 |
Q |
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| T |
39536478 |
tgcttcttaaaacaagtttccatagtatgaccacagtaaaattcaaacaaaattctaagaatcattaaccaaacttagta-tgaaaaatcatgttcttaa |
39536380 |
T |
|
| Q |
201 |
tgttgacagaagttgtttc |
219 |
Q |
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||||||||||||||||||| |
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| T |
39536379 |
tgttgacagaagttgtttc |
39536361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 2544323 - 2544359
Alignment:
| Q |
130 |
accacagtaaaattcaaacaaaattctaagaatcatt |
166 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
2544323 |
accacagtaaaactcaaacaaaattctaagaatcatt |
2544359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 2517816 - 2517941
Alignment:
| Q |
1 |
tggtatctctttttcagaatgattgccactatccatttccttaccacaatcttctcagctaaaatattttccctttggcttagatcgaagagttaaatcg |
100 |
Q |
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||||| |||||||||| ||||||| | |||||||||| || | ||||||| | | |||||| |||||||| ||||||| ||||| | ||| ||| | |
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| T |
2517816 |
tggtacctctttttcacaatgatttctgctatccattttctcatcacaatcgttgcggctaaagtattttccttttggctaagatccatgaggcaaactg |
2517915 |
T |
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| Q |
101 |
tgcttcttaaaacaagtttccatagt |
126 |
Q |
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| T |
2517916 |
ttcttctttaaacaagtttctatagt |
2517941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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