View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5037_low_6 (Length: 233)
Name: NF5037_low_6
Description: NF5037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5037_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 27215247 - 27215049
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
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||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27215247 |
cgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccag |
27215148 |
T |
|
| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacaccac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27215147 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccac |
27215049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 27443654 - 27443852
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
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||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27443654 |
cgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccag |
27443753 |
T |
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| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacaccac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27443754 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctaagatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccac |
27443852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 27432957 - 27432758
Alignment:
| Q |
19 |
acgaactggatgctccgacaacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccacca |
118 |
Q |
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|||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
27432957 |
acgaaccggatgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccacca |
27432858 |
T |
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| Q |
119 |
gcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacaccac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27432857 |
gcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccac |
27432758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 27221209 - 27221011
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
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||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
27221209 |
cgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcggttgcaacggtgctggggcaatcccaccag |
27221110 |
T |
|
| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacaccac |
218 |
Q |
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|
||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
27221109 |
caacattggtagaaataacggtagcaacagacgggggacaagacttctacgatgtgagcaatgtggacggattcaacgtgccaatgtctgtaacgccac |
27221011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 27207876 - 27207684
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
27207876 |
cgaactggatgctccgacaacaacggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaatcccaccag |
27207777 |
T |
|
| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaa |
212 |
Q |
| |
|
||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| |||| |
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| T |
27207776 |
caacactggtagaaataacaatagcatccaacgggggacaagatttctacgatgtgagcaatgttgatgggttcaatgtgcccatgtccgtaa |
27207684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 27389134 - 27388972
Alignment:
| Q |
56 |
tgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggg |
155 |
Q |
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|
|||||||||||||||||||| ||||||||| | | ||||| |||||||||||||||||||||||||| ||||| ||||| || || ||| |||| || | |
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| T |
27389134 |
tgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccaccagcaactttggttgaaattacagtggcatcaaatggag |
27389035 |
T |
|
| Q |
156 |
gacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacaccac |
218 |
Q |
| |
|
||||||||||||||||||||||||| || || || ||||||||||||||||| ||||| |||| |
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| T |
27389034 |
gacaagatttctacgatgtgagcaacgttgacggtttcaacgtgccaatgtccgtaactccac |
27388972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 27410109 - 27409928
Alignment:
| Q |
37 |
caacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaata |
136 |
Q |
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|
|||||| | |||||| || |||||||| |||||||||| ||||||||| | || ||||| |||||||||||||||||||||||||| || || ||||| |
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| T |
27410109 |
caacaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggcgcaatcccaccagcaactttagttgaaatt |
27410010 |
T |
|
| Q |
137 |
accgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacaccac |
218 |
Q |
| |
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||| | ||| |||| || |||||||||||||||||||||||||| || || || |||||||||||||| | |||||| |||| |
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| T |
27410009 |
accatggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttcaacgtgccaatttttgtaactccac |
27409928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 27454834 - 27454712
Alignment:
| Q |
59 |
gccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggac |
158 |
Q |
| |
|
||||||||||||||| ||| |||||| | |||| ||| | ||| || |||||||||||||||||||||||||||||||| || || || || || ||| |
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| T |
27454834 |
gccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataacggttacatcagacaggagac |
27454735 |
T |
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| Q |
159 |
aagatttctacgatgtgagcaat |
181 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
27454734 |
aagatttctatgatgtgagcaat |
27454712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 20952716 - 20952660
Alignment:
| Q |
151 |
cgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtc |
207 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | ||||| ||| ||||||| |
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| T |
20952716 |
cgggggacaagatttatatgatgtgagcaatgtggacaggttcaatgtgtcaatgtc |
20952660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 41457747 - 41457895
Alignment:
| Q |
59 |
gccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggac |
158 |
Q |
| |
|
|||||||| ||||||| ||| || ||| ||| |||||| ||||| || ||| | |||||||||||||| | |||| || ||||| | | ||||| |||| |
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| T |
41457747 |
gccactgctgattgtggctccggccaagtcgcttgcaatggtgccggtgcagttccaccagcaacattagcagaactacacgtagaagccaacggtggac |
41457846 |
T |
|
| Q |
159 |
aagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtc |
207 |
Q |
| |
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|||| | ||||||| | |||||||| || || |||||||| || ||||| |
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| T |
41457847 |
aagactactacgatataagcaatgttgacgggttcaacgtacccatgtc |
41457895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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