View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5038-Insertion-1 (Length: 1065)
Name: NF5038-Insertion-1
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 728; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 167 - 1031
Target Start/End: Original strand, 36775061 - 36775929
Alignment:
| Q |
167 |
aacttgaaattctattgaaactagtagcactaatccatgttgtaacatgtctnnnnnnnttactatagattaaatgattaattaaataaagaaggtgtga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
36775061 |
aacttgaaattctattgaaactagtagcactaatccatgttgtaacatgtctaaaaaaattactattgattaaatgattaattaaataaagaaggtgcga |
36775160 |
T |
|
| Q |
267 |
taacaccct-tttttaattttcattaatatctaattatagtgttatttgcatgtatgcagctaacaaaaaggttcaaagcaaagaaaatatggtggtgct |
365 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36775161 |
taacaccctctttttaattttcattaatttctaattatagtgtgatttgcatgtatgcagctaacaaaaaggttcaaagcaaagaaaatatggtgatgct |
36775260 |
T |
|
| Q |
366 |
tttcgggtctgaaagttatagaaacggttctcaaaatgggttatcttcatctccaatgaaaaaatacgattccaccatagtcactggtgaattggatata |
465 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36775261 |
tttcgggtctgaaagtgatagaaacggttctcaaaatgggttatcttcatctccaatgaaaaaatacgattccaccatagtcactggtgaattggatata |
36775360 |
T |
|
| Q |
466 |
tggagttcactcttgacccnnnnnnngaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtgaaaaattcacaaaattatttga |
565 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36775361 |
tggagttcaatcttgacccaaaaaaagaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtgaaaaattcacaaaattatttaa |
36775460 |
T |
|
| Q |
566 |
gtgaaaagagtcttgaaatgtgcactgagattcttggatcagaaaatggatcagatgggttcttttcttcttacacatcatttgaagataataattccaa |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36775461 |
gtgaaaagagtcttgaaatgtgcactgagattcttggatcagaaaatggatcagatgggttcttttcttcttacacatcatttgaagataataattccaa |
36775560 |
T |
|
| Q |
666 |
ggatggtgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaa |
765 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36775561 |
ggatggtgaaaaattgaaagaaaaggtgaacatggtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaa |
36775660 |
T |
|
| Q |
766 |
atgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggactaagcgacaaaatggtcgc |
865 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36775661 |
atgaggccccaccgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccatcacataacaacttcttgg-ctaagcgacaaaatggtcgc |
36775759 |
T |
|
| Q |
866 |
cttatactcacatttgctaatgaagaagag-aaattgttgatgactttgagcagcatggttcattg-caaggtcattgcctttgatcaatg-tgttcctt |
962 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
36775760 |
cttatactcacatttgctaatgaagaagagaaaattgttgatgactttgagcaacatggttcattgccaaggtcattgcctttgatcaatgttgttcctt |
36775859 |
T |
|
| Q |
963 |
tgattcctaatgatc-actaaatagtattagcaacaaggttattgtctataggaacatgaacatatatca |
1031 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36775860 |
tgattcctaatgatcaacaaaatagtattagcaacaaggttattgtctataggaacatgaacatatatca |
36775929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 444 - 915
Target Start/End: Original strand, 36760025 - 36760493
Alignment:
| Q |
444 |
agtcactggtgaattggatatatggagttcactcttgacccnnnnnnngaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtg |
543 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36760025 |
agtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtg |
36760124 |
T |
|
| Q |
544 |
aaaaattcacaaaattatttgagtgaaaagagtcttgaaatgtgcactgagattcttggatcagaaaatggatcagatgggttcttttcttcttacacat |
643 |
Q |
| |
|
||||||||| | |||||| | |||| |||||||||||||| ||||| |||| ||||||||||||| ||| |||||||| ||| ||||||||||||| |
|
|
| T |
36760125 |
aaaaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactggctcagatggtttc---tcttcttacacat |
36760221 |
T |
|
| Q |
644 |
catttgaagataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctt |
743 |
Q |
| |
|
||| ||||||||| ||||| || |||| |||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||| || |
|
|
| T |
36760222 |
catctgaagataacaattcaaatgatgatgaaaacttgaaagaaaaggtggacatggtgaagaagattcgttgttttcctcctccacttccttcactttt |
36760321 |
T |
|
| Q |
744 |
tagtcaaagtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttg |
843 |
Q |
| |
|
||||||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||||| |||| ||||| |||||||||||||| |||||||| |
|
|
| T |
36760322 |
tagtcaaagccaaccacttcaaatgacaccccaacgtgacaatggaaggctgtttttgttcctacaagttgtgtcagttccttcacataataacttctt- |
36760420 |
T |
|
| Q |
844 |
gactaagcgacaaaatggtcgccttatactcacatttgctaatgaagaag-agaaattgttgatgactttgag |
915 |
Q |
| |
|
|| ||||||||||||||||| ||| | ||| | ||| |||||| |||| |||||||| |||||| |||||| |
|
|
| T |
36760421 |
caccaagcgacaaaatggtcgtcttgtcctctcgtttaataatgatgaagaagaaattgatgatgagtttgag |
36760493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 452 - 915
Target Start/End: Original strand, 36788029 - 36788492
Alignment:
| Q |
452 |
gtgaattggatatatggagttcactcttgacccnnnnnnngaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtgaaaaattc |
551 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36788029 |
gtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtgaaaaattc |
36788128 |
T |
|
| Q |
552 |
acaaaattatttgagtgaaaagagtcttgaaatgtgcactgagattcttggatcagaaaatggatcagatgggttcttttcttcttacacatcatttgaa |
651 |
Q |
| |
|
| | |||||| | |||| |||||||||||||| ||||| |||| ||||||||||||| ||| |||||||| |||| ||||||||||||||| ||| |
|
|
| T |
36788129 |
aaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactggctcagatggtttct---cttcttacacatcatatgag |
36788225 |
T |
|
| Q |
652 |
gataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaaa |
751 |
Q |
| |
|
||||| ||||| || || | |||||| ||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
36788226 |
gataacaattcaaacgaagatgaaaacttgaaagaaaaggcggacatggtgaagaaaccacgttgttatcctcctccacttccttcactctttagtcata |
36788325 |
T |
|
| Q |
752 |
gtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggactaagc |
851 |
Q |
| |
|
| |||||||| |||||| ||||| |||||||||||||| |||| |||||||||| |||| ||||| ||||||||| ||| || ||||| | |||||| |
|
|
| T |
36788326 |
gccaaccacttcaaatgatgccccgccgtgacaatggaaggttgtctttgttcctacaagttgtgtcaattccttcacctaataaattcttcg-ctaagc |
36788424 |
T |
|
| Q |
852 |
gacaaaatggtcgccttatactcacatttg---ctaatgaagaag-agaaattgttgatgactttgag |
915 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
36788425 |
gacaaaatggtcgccttatcctcacgtttgctactaatgatgaagaagaaattgatgaggactttgag |
36788492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 36774867 - 36775037
Alignment:
| Q |
12 |
ttataaccatcctaacccttttttccaaccccgagtgttctatacctctactgttgattactattttgttgcttcaggtaattcatttaaattcttttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36774867 |
ttataaccatcctaacccttttttccaacccctagtgttctatacctctactgttgaatactattttgttgcttcgggtaattcatttaaattcttttac |
36774966 |
T |
|
| Q |
112 |
aagctttatatgtatattttttctttctaaacccacattcatgtattagccaaataacttgaaattctatt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36774967 |
aagctttatatgtatattttttctttctaaactcacattcatgtattagcctaataacttgaaattctatt |
36775037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 452 - 894
Target Start/End: Original strand, 36796432 - 36796865
Alignment:
| Q |
452 |
gtgaattggatatatggagttcactcttgacccnnnnnnngaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtgaaaaattc |
551 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36796432 |
gtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctccttatattcacccacttgtgaaaaattc |
36796531 |
T |
|
| Q |
552 |
acaaaattatttgagtgaaaagagtcttgaaatgtgcactgagattcttggatcagaaaatggatcagatgggttcttttcttcttacacatcatttgaa |
651 |
Q |
| |
|
| |||| ||||| |||||||||||||| |||| ||||| |||| |||||| || ||| | |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
36796532 |
aaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctcaaagcagttcagatggattc---tcttcttacacatcatttgaa |
36796628 |
T |
|
| Q |
652 |
gataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaaa |
751 |
Q |
| |
|
||||| || ||||| ||| ||||||||||||||||| |||| ||| |||||||||||||||| || ||||||| ||||||||| |||| ||||||| |
|
|
| T |
36796629 |
gataacaactccaattatgatgaaaaattgaaagaaatagtgagcatggtgaagaaaccacgttcttatcctccttcacttccttcactcacaagtcaaa |
36796728 |
T |
|
| Q |
752 |
gtcaac-cactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggactaag |
850 |
Q |
| |
|
|| ||| ||| ||| | ||| |||||||||||||| ||||||||||||| |||| ||| |||||||||||| ||| ||||||| | ||||| |
|
|
| T |
36796729 |
gtgaacatggtcagaatca---accaccgtgacaatggaag---gtttttgttcctacaagttgtgcaggttccttcacacaactacttcttcg-ctaag |
36796821 |
T |
|
| Q |
851 |
cgacaaaatggtcgccttatactcacatttgctaatgaagaaga |
894 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| | |||||||||| |
|
|
| T |
36796822 |
cgacaaaatggtcgccttatcctcacgtttaatgatgaagaaga |
36796865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 36759805 - 36759858
Alignment:
| Q |
165 |
ataacttgaaattctattgaaactagtagcactaatccatgttgtaacatgtct |
218 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
36759805 |
ataacttggaattctattaaaactaatagcactaatccatgttgtaacatgtct |
36759858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 36796026 - 36796114
Alignment:
| Q |
75 |
ttttgttgcttcaggtaattcatttaaattcttttacaagctttatatgtatat-tttttctttctaaacccacattcatgtattagcc |
162 |
Q |
| |
|
||||||| | |||||||||||||| |||||||||| |||| || || ||||| | ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
36796026 |
ttttgtttcctcaggtaattcattaaaattctttttcaagtttgatgtgtatttatttttctgtctaaacccacattcatgtactagcc |
36796114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 36787739 - 36787809
Alignment:
| Q |
87 |
aggtaattcatttaaattcttttacaagctttatatgtatattttt-tctttctaaacccacattcatgta |
156 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| ||| | ||||| ||| ||||||||||||| |||||| |
|
|
| T |
36787739 |
aggtaattcattaaaattctttttcaagctttatgtgtttttttttctctctctaaacccacatgcatgta |
36787809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 36796288 - 36796341
Alignment:
| Q |
303 |
tagtgttatttgcatgtatgcagctaacaaaaaggttcaaagcaaagaaaatat |
356 |
Q |
| |
|
|||||||| || ||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
36796288 |
tagtgttacttacatttatgcagctaacaacaagattcaaagcaaagaaaatat |
36796341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 36759980 - 36760019
Alignment:
| Q |
321 |
tgcagctaacaaaaaggttcaaagcaaagaaaatatggtg |
360 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
36759980 |
tgcagctaacaacaagattcaaagcaaagaaaatatggtg |
36760019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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