View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038-Insertion-10 (Length: 248)
Name: NF5038-Insertion-10
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 9855335 - 9855110
Alignment:
| Q |
7 |
aataacaacttaaggttgatgcatgtagtgttaattaaagagtacaattgaagaaaaaataattaaaattgtatattggaaattaaaagtaacctgaaat |
106 |
Q |
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| T |
9855335 |
aataacaacttaagattgatgcatgtagtgttaattaaaga------------aaaaaataattaaa-ttgtatattggaaattaaaaataacctgaaat |
9855249 |
T |
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| Q |
107 |
annnnnnncaaatgttacagttacttgaaaagaattaatatgtaaggtggcacttattttaaaccgaacatagtaaatcattacataaataaaggtgcaa |
206 |
Q |
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| T |
9855248 |
atttttttcaaatgttacagttatttgaaaaaaa---atatgtaaggtggcacttattttaaaccgaacatagtaaatcattacataaataaaggtgcaa |
9855152 |
T |
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| Q |
207 |
agttaagaagttttgttcaaatatttttctttttgtggataa |
248 |
Q |
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| T |
9855151 |
agttaagaagttttgttcaaatatttttctttttgtggataa |
9855110 |
T |
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