View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038-Insertion-13 (Length: 292)
Name: NF5038-Insertion-13
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 2060118 - 2060243
Alignment:
| Q |
6 |
caacaaatgcatccacacattccccatcgtatccttcgttcaattctctcatcaactctcaaaccaatccatctacgcccattctcctcatggttatctc |
105 |
Q |
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| T |
2060118 |
caacaaatgcatccacacattccccatcgtatccttcgttcaattctctcatcaactctcaaaccaatccatctacgcccattctcctcatggttatccc |
2060217 |
T |
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| Q |
106 |
aacccggaaacccactcatcaactgg |
131 |
Q |
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| T |
2060218 |
aacccggaaacccactcatcaactgg |
2060243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 2060323 - 2060386
Alignment:
| Q |
229 |
ctttctcccctaacgatttcactctcatttcaactctcttcaccaacccatccatctcacccgg |
292 |
Q |
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| T |
2060323 |
ctttctcccctaacgatttcactctcatttcaactctcttcaccaacccatccatctcacccgg |
2060386 |
T |
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