View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038-Insertion-14 (Length: 293)
Name: NF5038-Insertion-14
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 49006277 - 49006562
Alignment:
| Q |
8 |
aattttgtaagtaaaattttgaggataaatatgttgatttagtgtgccttacctcttggatcttaatcaactcatgaatctctatttaagcctccatggt |
107 |
Q |
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| T |
49006277 |
aattttgtaagtcaaattttgaggataaatatgttgatttagtgtgccttacctcttggatcttaatcaactcatgaatctctatttaagcctccatggt |
49006376 |
T |
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| Q |
108 |
ttcaacacttctgcttgtgcactaaagccataccaaatactccaccatggcttcacatattcatcactatctactattatcctttaacataatccttcac |
207 |
Q |
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| T |
49006377 |
ttcaacacttctgcttgtgcactaaagccataccaaatactccaccatggcttcacatattcatcactatctactattatcctttaacataatccttcac |
49006476 |
T |
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| Q |
208 |
cttttttcatctacattgtgtgatcaaaacttcaacaactatatcattcacatgaacttatcagccatgcccaaacccttcttaag |
293 |
Q |
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| T |
49006477 |
cttttttcatctacattgtgtgatcaaaacttcaacaactatattattcacatgaacttatcagccatgccaaaacccttcttaag |
49006562 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 34964215 - 34964177
Alignment:
| Q |
244 |
aactatatcattcacatgaacttatcagccatgcccaaa |
282 |
Q |
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| T |
34964215 |
aactatatcatccacatgaacttatcagccatgcccaaa |
34964177 |
T |
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