View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5038-Insertion-16 (Length: 225)
Name: NF5038-Insertion-16
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-16 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0517 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 24426356 - 24426573
Alignment:
| Q |
8 |
atcaattcatccaaatccaaattgaaattcgggaaaatggtgtgggtttaaacccagatcttcatcttctattttgatattcgtttatgcttctaggtgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
24426356 |
atcaattcatccaaatccaaattgaaattctggaaaatggtgtgggtttaaacccatatcttcatcttctattttgatattcatttctgcttctgggtgt |
24426455 |
T |
|
| Q |
108 |
gttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgttattgagtttgatcatcaaattc |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24426456 |
gttttgttcaatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgttattgagtttgatcatcaaattc |
24426555 |
T |
|
| Q |
208 |
atcatcttcatcccccaa |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24426556 |
atcatcttcatcccccaa |
24426573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 37396217 - 37396141
Alignment:
| Q |
109 |
ttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
185 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || || |||||||||| || |||||| |||| |||||||| |
|
|
| T |
37396217 |
ttttgttcgatctatttcttgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
37396141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 34934105 - 34934032
Alignment:
| Q |
112 |
tgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
185 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| || || |||||||||| || |||||| |||| |||||||| |
|
|
| T |
34934105 |
tgttcgatctatttattgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
34934032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 31488997 - 31489198
Alignment:
| Q |
8 |
atcaattcatccaaatccaaattgaaattcgggaaaatggtgtgggtttaaac-ccagatc----ttcatc------ttctattttgatattcgtttatg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||| ||| ||||||| |||||| ||||||||||||||| |||| || |
|
|
| T |
31488997 |
atcaattcatccaaatccaaattgaaattctggtaactggtgtgggtcgaaaatccagatcgaaattcatccaaatcttctattttgatatttgtttctg |
31489096 |
T |
|
| Q |
97 |
cttctaggtgtgttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgttattgagtttga |
196 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||| || |||| |||||||||||||||||||| || |
|
|
| T |
31489097 |
cttctcggtgtgtttt------------tcttgtttcctcttcaatacactatttggttttctaatcaatttggattgtgatgcttgttattgagttcga |
31489184 |
T |
|
| Q |
197 |
tcatcaaattcatc |
210 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
31489185 |
tcttcaaattcatc |
31489198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 32197263 - 32197190
Alignment:
| Q |
112 |
tgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
185 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| || || |||||||||| || |||||| |||| |||||||| |
|
|
| T |
32197263 |
tgttcgatctatttcttgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
32197190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 10997 - 11073
Alignment:
| Q |
109 |
ttttgttcgatttgtttcttgtttcctcttcaatacactatctggttttctgatcgatctggacagtgatgcttgtt |
185 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || || |||||||||| || |||||| |||| |||||||| |
|
|
| T |
10997 |
ttttgttcgatctatttcttgtttcctcttcaatatacgatttggttttctgttcaatctggttagtgttgcttgtt |
11073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University