View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038-Insertion-2 (Length: 1011)
Name: NF5038-Insertion-2
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 49 - 541
Target Start/End: Complemental strand, 29400928 - 29400422
Alignment:
| Q |
49 |
tggtcttaaggcttttaactcacgtcacattatttgtgacttattagactcttcactcttatataaagatatt-----------gtaccggtctttaaag |
137 |
Q |
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| T |
29400928 |
tggtcttaaggcttttaactcacgtcacattatttgtgacttattagactcttcacccttatataaagatatttccaacatgttgcaccggtctttaaag |
29400829 |
T |
|
| Q |
138 |
atagctcgtgacttggtttaaacctcaaattaatagaaacaatttaatttctttctcccata----catttttggattgtatcaaaacaaccctacattt |
233 |
Q |
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| T |
29400828 |
atagctcgtgacttggtttaaacctcaaattaatagaaacaatttaatttctttctcccatatctgcatttttggattgtatcgaaacaaccctacattt |
29400729 |
T |
|
| Q |
234 |
taaaacccatgaatcacacaaccttctctgcataa-tttccttaaaaagattctctgcgttcnnnnnnnacctcagtttcatttagtgtgtcttctcggt |
332 |
Q |
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| T |
29400728 |
taaaacccatgaatcacacaaccttctc-gcataatttttcttaaaaagattctatgcgttc-ttttttacctcagtttcatttagtgtgtcttctcggt |
29400631 |
T |
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| Q |
333 |
gatgttccatttttgatgagatttaatttatctatgatcaaacgtgtattcgaaatcggggagaagaaacaccgacatcatannnnnnnnccgtggagaa |
432 |
Q |
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| T |
29400630 |
gatgtaccatttttgatgagatttaatttatctatgatcaaacgtgtattcgaaatcggggagaagaaacatcgacatcatatttttttcccgtgtagaa |
29400531 |
T |
|
| Q |
433 |
agtggatcaaaagctttttgcacaaaggaattaagcatagagaccgacaagacactgcatccctcactggttggacaaattaattcttgtaaagcaacaa |
532 |
Q |
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| T |
29400530 |
agtggatcaaaagctttttgcacaaaggaattaagcatagagaccgacaagacaatgcatccctcactggttgtacaaattaattcttgtaaagcaacaa |
29400431 |
T |
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| Q |
533 |
tggagactg |
541 |
Q |
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| T |
29400430 |
tggagactg |
29400422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 571 - 879
Target Start/End: Complemental strand, 29400412 - 29400100
Alignment:
| Q |
571 |
gaagacgatgtgaattgaggatgtgctaggagagacggttcaagcaacaatgttgtaaaactgcacgtgactcacttcgaggaattcaatcaagagcgta |
670 |
Q |
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| T |
29400412 |
gaagacgatgtgaattgaggatgtgctaggagagacggttcaagcaacaatgttgtaaaactgcacgtgactcacttcgaggaattcaatcaagagcgta |
29400313 |
T |
|
| Q |
671 |
tgaagtgattttaatccaatgaaccagacggtactatgtctagagttaaaatcatcattgtctcacttgcatgattttccaag----attcatgaacgga |
766 |
Q |
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| T |
29400312 |
tgaagtgattttaatccaataaaccagacgtttctatgtctagagttaaaatcatcattgtctcacttgcatgattttccaagattaattcatgaacgga |
29400213 |
T |
|
| Q |
767 |
tgaaaaggaaacagagatttaatctatcaatggcttcagtgtttttgatgtatgaaattgaaatgcatatggttccatcttcaacgcaaagtcagtggaa |
866 |
Q |
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| T |
29400212 |
tgaaaaggaaacagagatttaatctatcaatggcttcagtgtttttgatgtatgaaattgaaaggcatatggttccatcttcaacgcaaagtcagtggaa |
29400113 |
T |
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| Q |
867 |
tcacaatattaac |
879 |
Q |
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| T |
29400112 |
tcacaatattaac |
29400100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 936 - 1011
Target Start/End: Complemental strand, 29400082 - 29400005
Alignment:
| Q |
936 |
atatttaatttagtgaaacattgaagtgatttg-taaaggtctttgaa-taaattaaatgaagggatgacgagattca |
1011 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
29400082 |
atatttaatttagtgaaacattgaagtgatttgttaaaggtctttgaattaaattaaatgaaggaatgaggagattca |
29400005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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