View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5038-Insertion-3 (Length: 1000)

Name: NF5038-Insertion-3
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5038-Insertion-3
NF5038-Insertion-3
[»] chr1 (6 HSPs)
chr1 (8-621)||(4410809-4411425)
chr1 (613-990)||(4411655-4412041)
chr1 (497-568)||(4327574-4327645)
chr1 (481-573)||(48635169-48635260)
chr1 (479-554)||(42423183-42423258)
chr1 (473-531)||(441649-441707)
[»] chr8 (3 HSPs)
chr8 (486-554)||(35775218-35775286)
chr8 (479-570)||(8252812-8252903)
chr8 (482-554)||(7624591-7624663)
[»] chr2 (6 HSPs)
chr2 (473-582)||(4908798-4908907)
chr2 (479-573)||(4119404-4119498)
chr2 (479-573)||(11510968-11511061)
chr2 (475-533)||(6989789-6989847)
chr2 (496-586)||(28206708-28206798)
chr2 (479-520)||(6767689-6767730)
[»] chr4 (5 HSPs)
chr4 (479-523)||(51093272-51093316)
chr4 (481-532)||(19067434-19067485)
chr4 (482-548)||(22887822-22887888)
chr4 (482-548)||(22939486-22939552)
chr4 (479-573)||(41058935-41059029)
[»] chr7 (1 HSPs)
chr7 (479-573)||(21435975-21436070)
[»] chr3 (8 HSPs)
chr3 (481-572)||(35951047-35951138)
chr3 (495-570)||(40339257-40339331)
chr3 (473-571)||(30958044-30958142)
chr3 (473-571)||(30973856-30973954)
chr3 (483-573)||(51667153-51667243)
chr3 (491-531)||(42534464-42534504)
chr3 (504-551)||(44375518-44375564)
chr3 (481-522)||(23187691-23187732)
[»] chr6 (3 HSPs)
chr6 (502-570)||(26492568-26492636)
chr6 (495-586)||(25208656-25208747)
chr6 (491-524)||(7263099-7263132)
[»] chr5 (1 HSPs)
chr5 (479-533)||(10859855-10859909)


Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Original strand, 4410809 - 4411425
Alignment:
Q  8 gataaacatgtcaagttttcgcctgcaatattaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacgttttcatttgaaaatc 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4410809 gataaacatgtcaagttttcgcccgcaatattaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacattttcatttgaaaatc 4410908  T
Q  108 ttgatgagataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgttgaacacagccaagcgaaggataggaataaatcgcgacga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  4410909 ttgatgagataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgtcaaacacaaccaagcgaaggataggaataaatcgcgacga 4411008  T
Q  208 gagtcctatgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttctacagatggtacattgc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411009 gagtcctatgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttctacagatggtacattgc 4411108  T
Q  308 taaccacttagattacattacattcatttggttttcgtaaaaccgtttacggtcctgattgcgttagtatatgtctgctggtttcactcttgaacatgga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411109 taaccacttagattacattacattcatttggttttcgtaaaaccgtttatggtcctgattgcgttagtatatgtctgctggtttcactcttgaacatgga 4411208  T
Q  408 aaaaattgatttctgatgtgtagaacggattttgacatctttggatgttttctagtagagttggtacttagagctagaattttgagcttttgcctctaca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411209 aaaaattgatttctgatgtgtagaacggattttgacatctttggatgttttctagtagagttggtacttagagctagaattttgagcttttgcctctaca 4411308  T
Q  508 attgatttttagccttgaatttattgctcaatcaacttttacat--gaatctatcgaaacat-aaatcaaattacatgcaacaccctcttaggaagaaaa 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4411309 attgatttttagccttgaatttattgctcaatcaacttttacatgagaatctatcgaaacataaaatcaaattacatgcaacaccctcttaggcagaaaa 4411408  T
Q  605 tcaaaattaagttttgt 621  Q
    |||||||||| ||||||    
T  4411409 tcaaaattaatttttgt 4411425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 613 - 990
Target Start/End: Original strand, 4411655 - 4412041
Alignment:
Q  613 aagttttgttcgagaatgctgatagtagtttttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt 712  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411655 aagttttgttcgagaatgctgatagtagtctttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt 4411754  T
Q  713 tcatgctgctactgagctcaatccacaaatacatgcgcactttgctgtcaaaacggtttctcaactatataaggacttgagagagaggattagcgaacat 812  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4411755 tcatgctgctactgagctcgatccacaaatacacgcgcactttgctgtcaaaacggtttctcgactatataaggacttgagagagaggattagcaaacat 4411854  T
Q  813 attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattc-aaagcaat-ggctcttcaac 910  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  4411855 attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaac 4411954  T
Q  911 agttg-aaaggaaagatcag-tatggag--cccaaa-gggcttg-cag-agratctgtttccgttctacgtgattggatgtttcaga 990  Q
    ||||| |||||||||||||| |||||||  |||||| ||||||| ||| |  |||||||||||||||||||||||||||||||||||    
T  4411955 agttgaaaaggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcaga 4412041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 497 - 568
Target Start/End: Complemental strand, 4327645 - 4327574
Alignment:
Q  497 ttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacata 568  Q
    |||||||||||||||||||||| |||||||||||||| |||| | ||| |||||||||| |||  |||||||    
T  4327645 ttgcctctacaattgatttttatccttgaatttattgttcaagccactattacatgaatatattcaaacata 4327574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 481 - 573
Target Start/End: Complemental strand, 48635260 - 48635169
Alignment:
Q  481 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 573  Q
    |||||||||  |||||||| ||||| |||||||||||| | |||||||||| | | || | || ||||||||||| |||| ||||||||||||    
T  48635260 ctagaatttgaagcttttgtctctataattgatttttaccattgaatttatcgttaaacccac-tttacatgaatgtatccaaacataaatca 48635169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 554
Target Start/End: Complemental strand, 42423258 - 42423183
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 554  Q
    ||||||||||| ||||||||| ||||| |||||| ||||||| |  ||||||||| |||| | |||||||| ||||    
T  42423258 agctagaatttagagcttttgtctctaaaattgaattttagcttcaaatttattggtcaacccacttttacgtgaa 42423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 473 - 531
Target Start/End: Complemental strand, 441707 - 441649
Alignment:
Q  473 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttat 531  Q
    ||||| |||||||||||  || ||| || |||||||||||||||||| |||||||||||    
T  441707 acttaaagctagaatttatagttttggcttctacaattgatttttagacttgaatttat 441649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 35775218 - 35775286
Alignment:
Q  486 attttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 554  Q
    |||| ||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||||    
T  35775218 atttggagcttttgtctctacaattgatttttagccttgaattcattgttcaatccacttttacatgaa 35775286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 479 - 570
Target Start/End: Original strand, 8252812 - 8252903
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 570  Q
    ||||| ||||| |||| ||||||||| || ||||| ||| |||||||||||| || |||| | ||||||||||| || |||| |||||||||    
T  8252812 agctacaatttggagcgtttgcctcttcatttgatgttttgccttgaatttactgttcaacccacttttacatgcatgtatctaaacataaa 8252903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 482 - 554
Target Start/End: Complemental strand, 7624663 - 7624591
Alignment:
Q  482 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 554  Q
    ||||| || ||||||||| |||||||||||| |||| |||||||| |||||| |||||  |||||||| ||||    
T  7624663 tagaagttggagcttttggctctacaattgacttttggccttgaaattattgttcaatttacttttacttgaa 7624591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 4908798 - 4908907
Alignment:
Q  473 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatc 572  Q
    ||||| ||||| |||||  || ||| || ||||||||||||||| |||||| | ||||||| |||||| ||||| |||||||| |||| |||||||||||    
T  4908798 acttaaagctaaaatttgtagatttggcttctacaattgattttcagccttaactttattgttcaatccactttaacatgaatgtatccaaacataaatc 4908897  T
Q  573 aaattacatg 582  Q
    |  |||||||    
T  4908898 actttacatg 4908907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 479 - 573
Target Start/End: Complemental strand, 4119498 - 4119404
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 573  Q
    |||||||||||  |||||||||| ||| |||||| |||||||| ||||| ||||| |||||  ||  |||||||||| |||  ||||||||||||    
T  4119498 agctagaatttgaagcttttgccgctataattgacttttagccatgaatgtattgatcaattcacgcttacatgaatgtattcaaacataaatca 4119404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 479 - 573
Target Start/End: Original strand, 11510968 - 11511061
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 573  Q
    ||||||||||| ||| |||||||||||||||| | ||||| |||  ||||||||| |||| | ||||||| |||||| || | ||||||||||||    
T  11510968 agctagaatttggagtttttgcctctacaattta-ttttaacctcaaatttattgttcaacccacttttatatgaatgtagctaaacataaatca 11511061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 475 - 533
Target Start/End: Complemental strand, 6989847 - 6989789
Alignment:
Q  475 ttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattg 533  Q
    ||||||||||||||| | | ||||| |||||||||||||||| |  |||||||||||||    
T  6989847 ttagagctagaatttagtgtttttgactctacaattgattttcaatcttgaatttattg 6989789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 496 - 586
Target Start/End: Original strand, 28206708 - 28206798
Alignment:
Q  496 tttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatcaaattacatgcaac 586  Q
    ||||||| ||| |||||||||||| ||  ||||||||  ||||  ||||||||||||||| || | |||||||||| || |||||| ||||    
T  28206708 tttgcctataccattgatttttagtctcaaatttattattcaacaaacttttacatgaatgtacctaaacataaattaatttacattcaac 28206798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 6767689 - 6767730
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagc 520  Q
    ||||||||||| |||||||||| ||||||||||| |||||||    
T  6767689 agctagaatttggagcttttgcttctacaattgaattttagc 6767730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 51093272 - 51093316
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagcctt 523  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  51093272 agctagaatttggagcttttgcctctacaattgatttttagcctt 51093316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 532
Target Start/End: Original strand, 19067434 - 19067485
Alignment:
Q  481 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttatt 532  Q
    |||||||||  |||||||| |||||||||||||| ||||||| |||||||||    
T  19067434 ctagaatttgaagcttttgtctctacaattgattattagcctcgaatttatt 19067485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 482 - 548
Target Start/End: Complemental strand, 22887888 - 22887822
Alignment:
Q  482 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaactttta 548  Q
    |||||||| |||||||| |||||| ||||| ||||||  ||||||||||||| ||||  ||||||||    
T  22887888 tagaatttagagcttttccctctaaaattggtttttactcttgaatttattgttcaaataactttta 22887822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 482 - 548
Target Start/End: Complemental strand, 22939552 - 22939486
Alignment:
Q  482 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaactttta 548  Q
    |||||||| |||||||| |||||| ||||| ||||||  ||||||||||||| ||||  ||||||||    
T  22939552 tagaatttagagcttttccctctaaaattggtttttactcttgaatttattgttcaaataactttta 22939486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 479 - 573
Target Start/End: Original strand, 41058935 - 41059029
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 573  Q
    ||||| ||||| ||| |||||||||||||||||| ||||| | || |||| |||| |||| | ||||||| || ||| ||||  |||||||||||    
T  41058935 agctaaaatttcgagtttttgcctctacaattgacttttaactttaaattgattgttcaacccacttttatataaatgtatctgaacataaatca 41059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 479 - 573
Target Start/End: Complemental strand, 21436070 - 21435975
Alignment:
Q  479 agctagaattttg-agcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 573  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||  ||||| |||||| |||||| |||||| ||||||   ||| ||||||||||||    
T  21436070 agctagaattttggagcttttgcctctaccattgaattttaggtttgaagttattgttcaatccacttttccatgaaggcatccaaacataaatca 21435975  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 481 - 572
Target Start/End: Original strand, 35951047 - 35951138
Alignment:
Q  481 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatc 572  Q
    ||||||||||| ||||||||| |||||||||| |||| || |||||||| ||| |||| | ||| ||| | |||| |||| |||||||||||    
T  35951047 ctagaattttgcgcttttgcccctacaattgagttttggcattgaattttttgttcaagccactattatacgaatgtatctaaacataaatc 35951138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 495 - 570
Target Start/End: Original strand, 40339257 - 40339331
Alignment:
Q  495 ttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 570  Q
    |||||| ||||||||||||||| |||||||||||||||| |||||  |||||||| | ||| |||| |||||||||    
T  40339257 ttttgcttctacaattgatttt-agccttgaatttattgttcaattcacttttacctaaatatatccaaacataaa 40339331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 30958044 - 30958142
Alignment:
Q  473 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaat 571  Q
    ||||| |||| | |||| |||||||||  ||||||| ||| ||||| |||| || |||||| |||||  |||||||||||||| |||| ||||||||||    
T  30958044 acttaaagctgggatttagagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaatatatccaaacataaat 30958142  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 30973856 - 30973954
Alignment:
Q  473 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaat 571  Q
    ||||| |||| | |||| |||||||||  ||||||| ||| ||||| |||| || |||||| |||||  |||||||||||||| |||| ||||||||||    
T  30973856 acttaaagctgggatttagagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaatatatccaaacataaat 30973954  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 483 - 573
Target Start/End: Original strand, 51667153 - 51667243
Alignment:
Q  483 agaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 573  Q
    ||||||| ||| ||||||  |||  |||||| || |||||||||||||||| ||||   ||||||||||||||||| | ||||||||||||    
T  51667153 agaatttggagtttttgcaactatgattgatattcagccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatca 51667243  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 491 - 531
Target Start/End: Original strand, 42534464 - 42534504
Alignment:
Q  491 gagcttttgcctctacaattgatttttagccttgaatttat 531  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  42534464 gagcttttgcctctacaattgttttttagccttaaatttat 42534504  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 44375564 - 44375518
Alignment:
Q  504 tacaattgatttttagccttgaatttattgctcaatcaacttttacat 551  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  44375564 tacaattgatttttagccttaaatttattgttcaatc-acttttacat 44375518  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 522
Target Start/End: Original strand, 23187691 - 23187732
Alignment:
Q  481 ctagaattttgagcttttgcctctacaattgatttttagcct 522  Q
    |||||||||| || |||| |||||||||||||||||||||||    
T  23187691 ctagaattttaaggttttacctctacaattgatttttagcct 23187732  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 502 - 570
Target Start/End: Original strand, 26492568 - 26492636
Alignment:
Q  502 tctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 570  Q
    ||||||||||||||||||||| |||| ||||| |||||| || | ||||| ||| |||| |||||||||    
T  26492568 tctacaattgatttttagcctcgaatatattgttcaatccacgtatacataaatatatccaaacataaa 26492636  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 586
Target Start/End: Original strand, 25208656 - 25208747
Alignment:
Q  495 ttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatcaaattacatgcaac 586  Q
    ||||| ||||||| |||||| |||| || |||| |||   | |||| |||||||||| |||||||||||||||||||||  |||||| ||||    
T  25208656 ttttgtctctacagttgattattagactcgaatatatcatttaatccacttttacataaatctatcgaaacataaatcattttacattcaac 25208747  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 524
Target Start/End: Original strand, 7263099 - 7263132
Alignment:
Q  491 gagcttttgcctctacaattgatttttagccttg 524  Q
    |||||||||| |||||||||||||||||||||||    
T  7263099 gagcttttgcttctacaattgatttttagccttg 7263132  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 10859909 - 10859855
Alignment:
Q  479 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattg 533  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||  |||||||||    
T  10859909 agctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattg 10859855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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