View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5038-Insertion-5 (Length: 824)

Name: NF5038-Insertion-5
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5038-Insertion-5
NF5038-Insertion-5
[»] chr1 (4 HSPs)
chr1 (198-824)||(8427722-8428351)
chr1 (7-77)||(8428435-8428505)
chr1 (110-157)||(8428377-8428424)
chr1 (508-581)||(42241878-42241951)
[»] chr4 (1 HSPs)
chr4 (535-611)||(47808836-47808912)
[»] chr8 (4 HSPs)
chr8 (459-525)||(11644384-11644450)
chr8 (296-362)||(35749069-35749135)
chr8 (305-481)||(4187287-4187463)
chr8 (465-510)||(9685876-9685921)
[»] chr5 (2 HSPs)
chr5 (535-612)||(12920552-12920629)
chr5 (458-501)||(5474063-5474106)
[»] chr7 (2 HSPs)
chr7 (244-279)||(43230735-43230770)
chr7 (535-649)||(30053655-30053769)


Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 198 - 824
Target Start/End: Complemental strand, 8428351 - 8427722
Alignment:
Q  198 tttcaaatttgtcatttatgttaataaaagagaacaagtactttaatattttatt----ttattttataacaaaatgatcccttttttcatccggcatag 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    || |||| |||||||||||||||||||||||||||||||||    
T  8428351 tttcaaatttgtcatttatgttaataaaagagaacaagtactttaatatttttttattttttttttgtaacaaaatgatcccttttttcatccggcatag 8428252  T
Q  294 tcaaaaagtgcttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaacaagaatacttccatgcagttcttcatcttgtt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8428251 tcaaaaagtgcttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaacaagaatacttccatgcagttcttcatcttgtt 8428152  T
Q  394 tcccaatttaatcataattttatagataatattttcatcaacaaataaatcaagtaatcaatcgaatcaattttgtttcaaactaagattaaataataca 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8428151 tcccaatttaatcataattttatagataatattttcatcaacaaataaatcaagtaatcaatcgaatcgattttgtttcaaactaagattaaataataca 8428052  T
Q  494 catatgaatcgtagtttaagagtgatgaatttagatacatgaacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagta 593  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  8428051 catatgaatcctagtttaagagtggtgaatttagacacatgaacttagcaataaacatctaagtaaacactttttatctgagtttgatggaaagagagta 8427952  T
Q  594 acaatgcatattttttatgacataacgcaccagataaacacttttactaacataaatgactatttaaaataaataaaatgattaatatgatacaaacatt 693  Q
    ||  ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8427951 acggtgcatat-ttttatgacataacgcactaggtaaacacttttactaacataaatgactatttaaaataaataaaatgattaatatgatacaaacgtt 8427853  T
Q  694 aaatttggacctcagaatgtatgtggccaaatctttacaaatatcggtagaaactcagatttctaaggccaaacaatcacaagaagtagttttttaaaac 793  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  8427852 aaatttggacctcaaaatgtatgtggccaaatctttacaaatatcagtagaaattcagatttctaaagctaaacaatcacaagaagtagttttttaaaac 8427753  T
Q  794 attggtgttagtgcgaatttttgttaaatgg 824  Q
    |||||||||||||||||||||||||||||||    
T  8427752 attggtgttagtgcgaatttttgttaaatgg 8427722  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 8428505 - 8428435
Alignment:
Q  7 atagttttggaggttagagttaatcacatctatagataaataaatcatcgtcctgatatttttgaggatgg 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  8428505 atagttttggaggttagagttaatcacatctatagataaataaatcgtcgtcctcatattttagaggatgg 8428435  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 8428424 - 8428377
Alignment:
Q  110 tttttagggctggcctctttgtttacataaatataacacagattcgtc 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8428424 tttttagggctggcctctttgtttacataaatataacacagattcgtc 8428377  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 581
Target Start/End: Complemental strand, 42241951 - 42241878
Alignment:
Q  508 tttaagagtgatgaatttagatacatgaacttagcaatatacatctacgtaaacactttttatctgagtttgat 581  Q
    |||||||||| |||||||||||| ||||||||| || || || || || ||||||||||||| || ||||||||    
T  42241951 tttaagagtggtgaatttagatatatgaacttaacattaaacgtccacataaacactttttaactaagtttgat 42241878  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 535 - 611
Target Start/End: Complemental strand, 47808912 - 47808836
Alignment:
Q  535 aacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagtaacaatgcatattttttat 611  Q
    |||||||||||| ||||| || ||| ||||||||| | ||||||||||||||||||||||| |||||| | ||||||    
T  47808912 aacttagcaataaacatccacataagcactttttaaccgagtttgatggaaagagagtaacgatgcatgtattttat 47808836  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 525
Target Start/End: Complemental strand, 11644450 - 11644384
Alignment:
Q  459 atcaattttgtttcaaactaagattaaataatacacatatgaatcgtagtttaagagtgatgaattt 525  Q
    ||||| ||||||||||| ||||| ||||||||| ||||||||||| || ||| ||| ||||||||||    
T  11644450 atcaaatttgtttcaaattaagactaaataatatacatatgaatcctaattttagaatgatgaattt 11644384  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 35749135 - 35749069
Alignment:
Q  296 aaaaagtgcttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaaca 362  Q
    |||||||||||||||||| |||||| ||||| || |||||||||||   ||||||||| ||||||||    
T  35749135 aaaaagtgcttacatgatcatttaacattgatgtcaaaagttcaaagagtgtttatgataccaaaca 35749069  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 481
Target Start/End: Original strand, 4187287 - 4187463
Alignment:
Q  305 ttacatgattatttaaaattgaggtgaaaagttcaaaagttgtttatgaaaccaaacaagaatacttccatgcagt-tcttcatcttgtttcccaattta 403  Q
    ||||||||| |||||| ||||||||| || || |||    ||||||||| | |||||| || ||||| ||| || | ||||| | |||||| | ||||||    
T  4187287 ttacatgatcatttaacattgaggtggaaggtccaattagtgtttatgacatcaaacatgattacttacatacattatcttcttattgttttctaattta 4187386  T
Q  404 atcataattttatagataatattttcatcaacaa----ataaatcaagtaatcaatcgaatcaattttgtttcaaactaaga 481  Q
    ||| ||| |||||||||||   ||||||||||||    |||||||||||||||     |||||||||||||||||| |||||    
T  4187387 atcctaaatttatagataaatatttcatcaacaacgttataaatcaagtaatc-----aatcaattttgtttcaaattaaga 4187463  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 9685921 - 9685876
Alignment:
Q  465 tttgtttcaaactaagattaaataatacacatatgaatcgtagttt 510  Q
    ||||||||||||||||||| |||||||||| ||| |||| ||||||    
T  9685921 tttgtttcaaactaagattgaataatacacctataaatcctagttt 9685876  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 612
Target Start/End: Original strand, 12920552 - 12920629
Alignment:
Q  535 aacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagtaacaatgcatattttttatg 612  Q
    |||||||||||| ||||| || |||||| |||||| ||||||||||| |||||||  |||  |||||||| |||||||    
T  12920552 aacttagcaataaacatccacataaacaatttttaactgagtttgatagaaagaggataatgatgcatatattttatg 12920629  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 501
Target Start/End: Original strand, 5474063 - 5474106
Alignment:
Q  458 aatcaattttgtttcaaactaagattaaataatacacatatgaa 501  Q
    ||||||||||||||||||  |||||| |||||||||||||||||    
T  5474063 aatcaattttgtttcaaatcaagattgaataatacacatatgaa 5474106  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 43230735 - 43230770
Alignment:
Q  244 tattttattttattttataacaaaatgatccctttt 279  Q
    |||||||||||||||||||||||| |||||||||||    
T  43230735 tattttattttattttataacaaattgatccctttt 43230770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 535 - 649
Target Start/End: Complemental strand, 30053769 - 30053655
Alignment:
Q  535 aacttagcaatatacatctacgtaaacactttttatctgagtttgatggaaagagagtaacaatgcatattttttatgacataacgcaccagataaacac 634  Q
    |||||||||||| ||||| || ||| |||||||||  ||||||||||||||| | | |||   ||||||| ||||||||| ||| | || ||||  |||     
T  30053769 aacttagcaatacacatccacataagcactttttaattgagtttgatggaaatataataatggtgcatatattttatgacttaaaggactagatgcacaa 30053670  T
Q  635 ttttactaacataaa 649  Q
    ||| |||||||||||    
T  30053669 tttcactaacataaa 30053655  T

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