View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5038-Insertion-6 (Length: 607)
Name: NF5038-Insertion-6
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 33116808 - 33117167
Alignment:
| Q |
8 |
gttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116808 |
gttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgttt |
33116907 |
T |
|
| Q |
108 |
ctcaatcctttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcatagcaattttctttgtcctcgtttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
33116908 |
ctcaatcctttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcatagcaagttcctttgtcctcgtttt |
33117007 |
T |
|
| Q |
208 |
cgtaccagaaaccaaaggtgttccaattgaggaagtggagaagatgcttgaacaaaggactctgcaattcaagttttggaataagagaatcgcctctcag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117008 |
cgtaccagaaaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaaggactctgcaattcaagttttggaataagagaatcgcctctcag |
33117107 |
T |
|
| Q |
308 |
aatggttgagttagtttatgttagttttaaggtttatgactattttcttaggatctgcattaataatg |
375 |
Q |
| |
|
|| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117108 |
aagggttgagtcagtttgagtta--------gtttatgactattttcttaggatctgcattaataatg |
33117167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 413 - 607
Target Start/End: Original strand, 33117205 - 33117397
Alignment:
| Q |
413 |
ggattaccagcttaaaaaataagtggaatgaat--------tgtgaatataaaattatactactcaacatttggtaaattagagctttcactgtttcaca |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117205 |
ggattaccagcttaaaaaataagtggaatgaatatccacattgtgaatataaaattatgctactcaacatttggtaaattagagctttcactgtttcaca |
33117304 |
T |
|
| Q |
505 |
tctcaaatatctaatcgttttgtctttttgttttcaatattctttattcacgctcattcacaatgatggcaaggattcttgcttggtgtttactatactt |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117305 |
tctcaaatatctaatcgttttgtctttttgttttcaatattcttt----------attcacaatgatggcaaggattcttgcttggtgtttactatactt |
33117394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 33120020 - 33120136
Alignment:
| Q |
8 |
gttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgttt |
107 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||||||||||||| | ||||||||||| || ||||||| || ||| |||| ||||| ||||||| |
|
|
| T |
33120020 |
gttccatgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgttt |
33120119 |
T |
|
| Q |
108 |
ctcaatcctttttatct |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33120120 |
ctcaatcctttttatct |
33120136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 21491994 - 21491739
Alignment:
| Q |
4 |
aacagttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttatt |
103 |
Q |
| |
|
||||||||||||||| | |||||||| || || || || |||||||||||| | ||||||||||| || ||||||| || ||| | || |||||| || |
|
|
| T |
21491994 |
aacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtttccaaccttgtt |
21491895 |
T |
|
| Q |
104 |
gtttctcaatcctttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcatagcaattttctttgtcctcg |
203 |
Q |
| |
|
||||||||||| || ||| | | || ||| |||||| ||| ||||| |||||| | |||| ||| ||||| | | || |||||||||||| || |
|
|
| T |
21491894 |
gtttctcaatcattcttaagtttgaccgtagcaattggacctgcttggactttcatgatatttgcaatcattgctattgttgccattttctttgtcatca |
21491795 |
T |
|
| Q |
204 |
ttttcgtaccagaaaccaaaggtgttccaattgaggaagtggagaagatgcttgaa |
259 |
Q |
| |
|
|||| || ||||| || ||||| || ||||| ||||||||||||| ||||||||| |
|
|
| T |
21491794 |
tttttgtgccagagactaaaggggtaccaatggaggaagtggagagtatgcttgaa |
21491739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University