View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038-Insertion-8 (Length: 455)
Name: NF5038-Insertion-8
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038-Insertion-8 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 53119616 - 53120070
Alignment:
| Q |
8 |
tatcatatttaaacctttcaataatgattaaggttttctttgttcagttttgaatagaaatcaatgtgcaaacattagcaaacagaaaattgaaaaggga |
107 |
Q |
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| T |
53119616 |
tatcatatttaaacctttaaataatgattaaggttttctttgttcagttttgaatagaaatcaatgtgcaaacattagcaaacagaaaattgaaaaggga |
53119715 |
T |
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| Q |
108 |
aaac------agaaaatcaa--aactgcatggcatagtttaagctcaaacatcaaatttcacttaaaaatatctatatgcttatgaataacaataccttt |
199 |
Q |
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| T |
53119716 |
aaatcctaatataatatcaagcaggtgcatggcatagtttaagctcaaacatcaaatttcacttaaaaatatctatatgcttatgaataacaataccttt |
53119815 |
T |
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| Q |
200 |
atttttgcgaggtaattaggaaaatcaatgccaaccatacaacaaaatagtgatagaaaatgcctagcattggtctatatcaatccatttctaatgatcc |
299 |
Q |
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| T |
53119816 |
atttttgcgaggtaattaggaaaatcaatgccaaccatacaacaaaatagtgataggaaatgcctagcattggtctatatcaatccatttctaatgatcc |
53119915 |
T |
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| Q |
300 |
ccaccccaaactaccnnnnnnnntgaaggaatacagcatgctactgcacgctaacattttctcagtaccatgcgtttcgaatccaatgacgccaacagtg |
399 |
Q |
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| T |
53119916 |
ccaccccaaactacc-aaaaaaatgaaggaatacagcatgctactgcacgctaacattttctcagtaccatgcgtttcgaatccaatgacgccaacagtg |
53120014 |
T |
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| Q |
400 |
tcacctagttccacagtagaatggaataatcaaaattcaaccacatcaaagtcaga |
455 |
Q |
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| T |
53120015 |
tcacctagttccacagtagaatggaataatcaaaattcaaccacatccaagtcaga |
53120070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 29 - 293
Target Start/End: Original strand, 53115633 - 53115908
Alignment:
| Q |
29 |
taatgattaaggttttctttgttcagttttgaatagaaatcaatgtgcaaacattagcaaacagaaaattgaaaagggaaaacagaaa------atcaaa |
122 |
Q |
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| T |
53115633 |
taataattaaggttttttttgttcaattttgaatagaaatcaatgtgcaaactttagcaaacagaaaattggaaagggaaaatcctaatatattatctaa |
53115732 |
T |
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| Q |
123 |
ac--tgcatggcatagtttaagctcaaacatcaaatttcacttaaaaatatctatatgcttatgaataacaa---tacctttatttttgcgaggtaatta |
217 |
Q |
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| T |
53115733 |
caggtgcatggcctagtgtaagcttaaacatcaaatttcacttaaatatattcttatggttatgaataacaacagtacctttatttttgcaaagtaatta |
53115832 |
T |
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| Q |
218 |
ggaaaatcaatgccaaccatacaacaaaatagtgatagaaaatgcctagcattggtctatatcaatccatttctaa |
293 |
Q |
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| T |
53115833 |
gaaaaatgaatgccaatcatacaacaaaatagtgatagaaaattcctaataattgtctatatcaatccatttctaa |
53115908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 53110381 - 53110487
Alignment:
| Q |
183 |
tgaataacaatacctttatttttgcgaggtaattaggaaaatcaatgccaaccatacaacaaaatagtgatagaaaatgcctagcattggtctatatcaa |
282 |
Q |
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| T |
53110381 |
tgaataacaataacttcatttttgcagcacaattaggaaaatgaatgccaatcatactacataatagtgagagaaaatgcctagtattggtctatatcaa |
53110480 |
T |
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| Q |
283 |
tccattt |
289 |
Q |
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| T |
53110481 |
tccattt |
53110487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 53116549 - 53116622
Alignment:
| Q |
379 |
aatccaatgacgccaacagtgtcacctagttccacagtagaatggaataatcaaaattcaaccacatcaaagtc |
452 |
Q |
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| T |
53116549 |
aatccaatgacaccaacagtgtcacctcgttccacagtagaatggaatttgcaaaattcaacctcatccaagtc |
53116622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 53110239 - 53110307
Alignment:
| Q |
41 |
ttttctttgttcagttttgaatagaaatcaatgtgcaaacattagcaaacagaaaattgaaaagggaaaa |
110 |
Q |
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| T |
53110239 |
ttttctttgttcaatattgaatagaaatcaacgtgcaaattttagcgaacag-aaattgaaaagggaaaa |
53110307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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