View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5038_high_7 (Length: 302)
Name: NF5038_high_7
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 40844614 - 40844344
Alignment:
| Q |
18 |
gtaatggattaaccaatcctgatattcagtacatggcatatacagattatgcattagagaatggactaattaataaggatgaatatgaaagaatcaacga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40844614 |
gtaatggattaaccaatcctgatattcagtacatggcatatacagattatgcattagagaatggactaattaataaggatgaatatgaaagaatcaacga |
40844515 |
T |
|
| Q |
118 |
gttgatcccaccatgtcaaaaggccacnnnnnnntgtggtataacattgagctcttttctctttctcagtcacaaatcatttagcaccaagagagaattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40844514 |
gttgatcccaccatgtcaaaaggccacaaaaaaatgtggtatagcattgagctcttttctctttctcagtcacaaatcatttagcaccaagagagaattt |
40844415 |
T |
|
| Q |
218 |
taccaatttattgtgcaagtcacgtgttatttttccttattgacactcttaatttatctgttagacactga |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40844414 |
taccaatttattgtgcaagtcacgtgttatttttccttattgacactcttaatttatctgttagacactga |
40844344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 40840171 - 40839901
Alignment:
| Q |
18 |
gtaatggattaaccaatcctgatattcagtacatggcatatacagattatgcattagagaatggactaattaataaggatgaatatgaaagaatcaacga |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
40840171 |
gtaatggattaaccaatcctgaaattcagtacatgtcatatacagattatgcattagacaatggactgattaataaggatgaatatgaaagaatcaacaa |
40840072 |
T |
|
| Q |
118 |
gttgatcccaccatgtcaaaaggccacnnnnnnntgtggtataacattgagctcttttctctttctcagtcacaaatcatttagcaccaagagagaattt |
217 |
Q |
| |
|
||||||||||||||||||| |||| || ||||||| |||||||| |||||| | ||||||| |||| || ||| ||||||| |||||||||||| |
|
|
| T |
40840071 |
gttgatcccaccatgtcaagaggcgacagaaacatgtggtagaacattgatctctttgccctttctcggtcaaaactcacttagcacgaagagagaattt |
40839972 |
T |
|
| Q |
218 |
taccaatttattgtgcaagtcacgtgttatttttccttattgacactcttaatttatctgttagacactga |
288 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||| || || |||||||||||||||||||| || |||||| |
|
|
| T |
40839971 |
taccaacttattgtacaagtcgcgtgttattttttctcatcgacactcttaatttatctgtcaggcactga |
40839901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 40850716 - 40850593
Alignment:
| Q |
18 |
gtaatggattaaccaatcctgatattcagtacatggcatatacagattatgcattagagaatggactaattaataaggatgaatatgaaagaatcaacga |
117 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| ||||||| |||||| ||||||||| |||||||||||||||||| ||||| ||| | |||||| | |
|
|
| T |
40850716 |
gtaacggattaaccaatccggaaattcagtacaaggcatatccagattttgcattagacaatggactaattaataagaatgaacatgccaacatcaacaa |
40850617 |
T |
|
| Q |
118 |
gttgatcccaccatgtcaaaaggc |
141 |
Q |
| |
|
|||| |||||| ||| |||||||| |
|
|
| T |
40850616 |
gttgttcccacgatgccaaaaggc |
40850593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 40850531 - 40850481
Alignment:
| Q |
214 |
attttaccaatttattgtgcaagtcacgtgttatttttccttattgacact |
264 |
Q |
| |
|
||||||||||||| |||||| | | || ||||||||||||||||||||||| |
|
|
| T |
40850531 |
attttaccaatttgttgtgccatttacttgttatttttccttattgacact |
40850481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University