View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5038_low_15 (Length: 235)

Name: NF5038_low_15
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5038_low_15
NF5038_low_15
[»] chr6 (9 HSPs)
chr6 (3-139)||(21150697-21150833)
chr6 (141-221)||(33726344-33726424)
chr6 (10-143)||(33726502-33726638)
chr6 (167-217)||(21150642-21150692)
chr6 (13-105)||(21140308-21140401)
chr6 (180-223)||(33714265-33714308)
chr6 (160-221)||(21241737-21241798)
chr6 (160-220)||(21286911-21286971)
chr6 (2-86)||(21233312-21233396)
[»] scaffold0016 (1 HSPs)
scaffold0016 (82-122)||(53912-53952)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 21150833 - 21150697
Alignment:
Q  3 ttttggtgggagatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagtattgtatccctattag 102  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||| ||||||| ||||    
T  21150833 tttttgtgggagatgatggttttatgatcctctaggctctttcgattcataataggttcagctgttataccaggatctttaagtattatatccctgttag 21150734  T
Q  103 gaacaacaccatcagccacatattcagtgttttcttg 139  Q
    || | ||| | ||||||||||||||||||||||||||    
T  21150733 gagctacatcgtcagccacatattcagtgttttcttg 21150697  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 33726424 - 33726344
Alignment:
Q  141 tcctttgggagaaggagaaggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagt 221  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||| |||||||||    
T  33726424 tcctttgggagaaggagaaggatccacttcattaatatctgaagccttctctttgacgggctcattatttggagaggtagt 33726344  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 33726638 - 33726502
Alignment:
Q  10 gggagatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagtattgtatccc---tattaggaac 106  Q
    |||||||| ||||||||||||||||| |||||||||||||||  |||||||||||| |||||||| |||| |||||||||||||| |   || ||||| |    
T  33726638 gggagatgtcggttttatgatcctcttggctctttcgattcacaataggttcagcttttatatcagaatccttaagtattgtatcactagtactaggagc 33726539  T
Q  107 aacaccatcagccacatattcagtgttttcttgatcc 143  Q
     ||| |||||||||||  |||||| | ||||||||||    
T  33726538 tacatcatcagccacagtttcagtttcttcttgatcc 33726502  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 21150692 - 21150642
Alignment:
Q  167 cttcatgaatatcagaagcattctctttgacaggctcattatttgtagagg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150692 cttcatgaatatcagaagcattctctttgacaggctcattatttgtagagg 21150642  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 21140401 - 21140308
Alignment:
Q  13 agatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatc-tttaagtattgtatccctattaggaa 105  Q
    ||||||| |||||||||| |||| ||||||||||||||  ||||| ||||||| ||| |||| |||| ||||||||||||||| ||||||||||    
T  21140401 agatgacagttttatgatactcttggctctttcgattcgcgatagtttcagcttttaaatcagaatcttttaagtattgtatcactattaggaa 21140308  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 33714308 - 33714265
Alignment:
Q  180 agaagcattctctttgacaggctcattatttgtagaggtagttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33714308 agaagcattctctttgacaggctcattatttgtagaggtagttg 33714265  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 21241737 - 21241798
Alignment:
Q  160 ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagt 221  Q
    |||| |||||||||||||||||||||||||||||||||||  |||| ||||| |||||||||    
T  21241737 ggatacacttcatgaatatcagaagcattctctttgacagagtcataatttgcagaggtagt 21241798  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 21286971 - 21286911
Alignment:
Q  160 ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtag 220  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||||    
T  21286971 ggatccacttcatgaatatcagaagcattctctatgacagagtcataatttgcagaggtag 21286911  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 21233396 - 21233312
Alignment:
Q  2 tttttggtgggagatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagt 86  Q
    ||||||| || ||| ||| |||||||||| |||| | ||||| ||||||| ||||| |||| || |||||| | |||||||||||    
T  21233396 tttttgggggaagacgacagttttatgatactcttgtctcttacgattcacgatagtttcaacttttatataagaatctttaagt 21233312  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 53912 - 53952
Alignment:
Q  82 taagtattgtatccctattaggaacaacaccatcagccaca 122  Q
    ||||||||||||| ||||||||| ||||| |||||||||||    
T  53912 taagtattgtatcactattaggagcaacatcatcagccaca 53952  T

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