View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038_low_17 (Length: 227)
Name: NF5038_low_17
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 38697737 - 38697541
Alignment:
| Q |
14 |
ttattctctcagtttcaacaacattggcatcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagc |
113 |
Q |
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| T |
38697737 |
ttattctctcagtttcaacaacattggcatcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagc |
38697638 |
T |
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| Q |
114 |
tgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697637 |
tgtaaacaaagctgtttcactcaaccccggcatcactgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgtt |
38697541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 38628544 - 38628740
Alignment:
| Q |
14 |
ttattctctcagtttcaacaacattggcatcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
38628544 |
ttattctctcagtttcaacaacattggcatcatcgacatctttgaagtatggtttctacaagacaacatgttcatccgtagaggcaattgttagaagagc |
38628643 |
T |
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| Q |
114 |
tgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgtt |
210 |
Q |
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| T |
38628644 |
tgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgtt |
38628740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 14256293 - 14256401
Alignment:
| Q |
80 |
catgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatga |
179 |
Q |
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| T |
14256293 |
catgtccatctgctgaggcaatagtgagaagtgcaattgacaaagctgtttcactcaatcctggtataggtgctggattgattagaatgcattttcatga |
14256392 |
T |
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| Q |
180 |
ttgctttgt |
188 |
Q |
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| T |
14256393 |
ttgctttgt |
14256401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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