View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5038_low_2 (Length: 556)

Name: NF5038_low_2
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5038_low_2
NF5038_low_2
[»] chr8 (8 HSPs)
chr8 (132-542)||(5944038-5944446)
chr8 (164-305)||(37230305-37230446)
chr8 (164-318)||(10528853-10529007)
chr8 (170-314)||(20669755-20669899)
chr8 (13-66)||(5943919-5943972)
chr8 (29-66)||(37227204-37227241)
chr8 (275-314)||(1217679-1217718)
chr8 (235-279)||(20520390-20520434)
[»] chr5 (7 HSPs)
chr5 (164-314)||(13271667-13271817)
chr5 (164-315)||(2740500-2740651)
chr5 (13-66)||(2743657-2743710)
chr5 (13-66)||(13274800-13274853)
chr5 (250-295)||(21102310-21102355)
chr5 (17-57)||(26654203-26654243)
chr5 (17-57)||(26925788-26925828)
[»] chr2 (4 HSPs)
chr2 (164-313)||(28030427-28030576)
chr2 (163-317)||(11815451-11815605)
chr2 (13-65)||(11815868-11815920)
chr2 (217-314)||(29908390-29908487)
[»] chr7 (4 HSPs)
chr7 (164-315)||(38455004-38455155)
chr7 (164-314)||(29033111-29033261)
chr7 (29-66)||(38458131-38458168)
chr7 (217-313)||(27874127-27874222)
[»] chr4 (14 HSPs)
chr4 (164-314)||(48577357-48577507)
chr4 (164-315)||(25146873-25147024)
chr4 (163-308)||(32310305-32310450)
chr4 (167-285)||(42563131-42563249)
chr4 (167-265)||(850586-850684)
chr4 (13-66)||(32305127-32305180)
chr4 (13-65)||(39466072-39466124)
chr4 (217-315)||(38131325-38131423)
chr4 (13-66)||(48040889-48040942)
chr4 (29-66)||(48576956-48576993)
chr4 (272-308)||(49286030-49286066)
chr4 (236-291)||(3679973-3680028)
chr4 (235-314)||(21058729-21058808)
chr4 (275-314)||(34939519-34939558)
[»] chr3 (5 HSPs)
chr3 (164-314)||(34440640-34440790)
chr3 (164-294)||(29523162-29523292)
chr3 (238-314)||(25574714-25574790)
chr3 (34-66)||(34437233-34437265)
chr3 (276-308)||(46636574-46636606)
[»] chr1 (11 HSPs)
chr1 (164-314)||(44488035-44488180)
chr1 (13-65)||(49000541-49000593)
chr1 (13-66)||(33296711-33296764)
chr1 (238-291)||(50907205-50907258)
chr1 (164-212)||(48996715-48996763)
chr1 (267-316)||(48996668-48996717)
chr1 (232-316)||(39222588-39222672)
chr1 (217-314)||(41871620-41871717)
chr1 (275-308)||(43514927-43514960)
chr1 (251-295)||(28539454-28539498)
chr1 (34-66)||(44490478-44490510)
[»] chr6 (6 HSPs)
chr6 (164-308)||(4362362-4362506)
chr6 (164-282)||(6288261-6288378)
chr6 (207-308)||(7526752-7526853)
chr6 (13-66)||(35018512-35018565)
chr6 (168-282)||(35006782-35006896)
chr6 (13-66)||(4362189-4362241)
[»] scaffold0010 (1 HSPs)
scaffold0010 (13-66)||(28773-28826)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 132 - 542
Target Start/End: Original strand, 5944038 - 5944446
Alignment:
Q  132 caagtattataggattacaaccaaatacaacttgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacat 231  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||| | | |||||||| |||     
T  5944038 caagtgttatatgattacaaccaaatacaacatgcgtgagttaactcacactgcgctacttaagtggcgcacaaaatacaacgtgcacaagttaagacac 5944137  T
Q  232 gctgcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattcaaaatttgaaacaaacg 331  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||||||| |||||||||||| |  ||||| |||| ||||   ||||| |||||||||    
T  5944138 gctgcgtgacttaacttgcgcaatgataatttaggcaacgctgcagggcgtgagcgaaaagtgttaggtgaaaagcagcatt-ttaatttaaaacaaacg 5944236  T
Q  332 atcaaggcaatttatttttaacacgccaaaatcaaatatattaaccaaacaaaaacttagtaaccaacgcaaggagtgtaaggatagaaattnnnnnnnn 431  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||            
T  5944237 atcaaggcaatttatttttaacaagccaaaatcaaatatattaatcaaacaaaaacttagtaaccaacgcaaagagtgtaaggatagaaatt-aaaaaga 5944335  T
Q  432 caaaagctaaatttaaaccatcaaagttgaaggttaaaagttaaatttcaaattttcaccttcggccattaaaataataaacgtttcactttgtcaaata 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5944336 caaaagctaaatttaaaccatcaaagttgaaggttaaaagttaaatttcaaattttcaccttcagccattaaaataataaacgtttcactttgtcaaata 5944435  T
Q  532 aatgaagaatt 542  Q
    |||||||||||    
T  5944436 aatgaagaatt 5944446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 37230305 - 37230446
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||||| |||  |||||| |||||||||| ||| |  ||||||    
T  37230305 tgcgtgagttaactcacgctgcgctacttaagtggcgcacaaaatacaacgtgcgcaagttaagacacactgcgtaacttaacttgtgcaggagtaattt 37230404  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaaga 305  Q
    |||||| ||| || |||||||||||||||||||| |||||||    
T  37230405 aggcaacgctgcaaggcgcgagcgaaaagtgctgggtgaaga 37230446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 164 - 318
Target Start/End: Complemental strand, 10529007 - 10528853
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    |||||||||||| |||||||| | | |||||||| ||| ||||||||||| | |||||||||| ||| ||||| ||||||||||| |||| || ||||||    
T  10529007 tgcgtgagttaattcacgctgcgttgcttaagtgacgcacaaaatacaacgtgcgcaagttaagacacgctgcctgacttaacttacgcaggggtaattt 10528908  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattcaaaa 318  Q
    | |||| ||| |||||| |||||| |||||||||   ||||||||||||||||||    
T  10528907 aagcaacgctgcagggcccgagcggaaagtgctggacgaagagcaacattcaaaa 10528853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 314
Target Start/End: Original strand, 20669755 - 20669899
Alignment:
Q  170 agttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttaggcaa 269  Q
    ||||||||||||| | |||||||||||  |||  || |  |||| |||||| |||||  || || |||||||||||||||| || || |||||| ||| |    
T  20669755 agttaactcacgcagcgctacttaagttacgcataagactcaacgtacgcatgttaagtcacgcagcgtgacttaacttgcacaagggtaatttgggcta 20669854  T
Q  270 tgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||| ||||||||||||||||||||| | | ||||||||| ||||    
T  20669855 tgctgcagggcgcgagcgaaaagtgcagggggaagagcaaaattc 20669899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 5943919 - 5943972
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||    
T  5943919 tcatcattcattcaagcattcattcaatcaaacattaagtcgtaagtatattac 5943972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 37227204 - 37227241
Alignment:
Q  29 catttattcaatcaagcattaagtcataagtatattac 66  Q
    |||| |||||||||||||||||||||||||||||||||    
T  37227204 cattcattcaatcaagcattaagtcataagtatattac 37227241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 1217718 - 1217679
Alignment:
Q  275 cagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  1217718 cagggcgcgagcgaaatgtgctgagtgaagagcaaaattc 1217679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 20520434 - 20520390
Alignment:
Q  235 gcgtgacttaacttgcgcatggataatttaggcaatgctacaggg 279  Q
    ||||||||||||||||||| ||||||||| ||| ||||| |||||    
T  20520434 gcgtgacttaacttgcgcaaggataatttgggctatgctgcaggg 20520390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 164 - 314
Target Start/End: Complemental strand, 13271817 - 13271667
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| || ||||||    
T  13271817 tgcgtgagttaactcacgctgcgctacttaagtggcgcacaaaatacaacgtacgcaagttaaaacatgttgcgtggcttaacttgcgcaggggtaattt 13271718  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||||| ||| ||||||| ||| ||||| || |  ||||||||||||||||    
T  13271717 aggcaacgctgcagggcgtgagggaaaattgttaggtgaagagcaacattc 13271667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 2740651 - 2740500
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||||| |||  |||||||||||||||||||||  | ||||||    
T  2740651 tgcgtgagttaactcacgctgcgctacttaagtggcgcacaaaatacaacgtgcgcaagttaagacacactgcgtgacttaacttgcgcagaggtaattt 2740552  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattca 315  Q
    |||||| ||| |||||||||| ||||||||| || |||||||||| ||||||    
T  2740551 aggcaacgctgcagggcgcgatcgaaaagtgttgggtgaagagcagcattca 2740500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 2743710 - 2743657
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  2743710 tcatcattcattcaagcattcattcaatcaagcattaagtcataagtacattac 2743657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 13274853 - 13274800
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  13274853 tcatcattcattcaagcattcgttcaatcaagcattaagtcataagtatattac 13274800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 21102310 - 21102355
Alignment:
Q  250 cgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgc 295  Q
    ||||||| || ||| ||||| |||||||||||||||||||||||||    
T  21102310 cgcatgggtattttgggcaaggctacagggcgcgagcgaaaagtgc 21102355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 26654243 - 26654203
Alignment:
Q  17 cattcattcaaacatttattcaatcaagcattaagtcataa 57  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  26654243 cattcattcaagcatttactcaatcaagcattaactcataa 26654203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 26925828 - 26925788
Alignment:
Q  17 cattcattcaaacatttattcaatcaagcattaagtcataa 57  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  26925828 cattcattcaagcatttactcaatcaagcattaactcataa 26925788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 28030576 - 28030427
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    |||||||||||||||||| || |||||||||||||| | ||||||||||| | |||||||||| |||   |||||||||||||||||||| || ||||||    
T  28030576 tgcgtgagttaactcacgttgcgctacttaagtggcacacaaaatacaacgtgcgcaagttaagacacattgcgtgacttaacttgcgcaggggtaattt 28030477  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacatt 313  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  28030476 aggcaacgctgcagggcgcgagcgaaaagtgctgggtgaagagcaacatt 28030427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 11815605 - 11815451
Alignment:
Q  163 ttgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatt 262  Q
    |||||||||||||||||||||| |||||||||||| | | ||||||| ||| | |||||||||| ||| || ||||| ||||||||||||| || |||||    
T  11815605 ttgcgtgagttaactcacgctgcgctacttaagtgactcacaaaatataacgtgcgcaagttaagacacgcagcgtgtcttaacttgcgcaagggtaatt 11815506  T
Q  263 taggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattcaaa 317  Q
    ||||||| ||| ||||||||||||||||| || || ||||||||||  |||||||    
T  11815505 taggcaacgctgcagggcgcgagcgaaaactgatgggtgaagagcagaattcaaa 11815451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 11815920 - 11815868
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatatta 65  Q
    ||||||||||||||| |||| ||||||||||||||||| || |||||||||||    
T  11815920 tcatcattcattcaagcattcattcaatcaagcattaactcgtaagtatatta 11815868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 29908487 - 29908390
Alignment:
Q  217 cgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    ||||||||||  || || |||| |||||||||||||| ||  | ||| ||||  ||| |||||||||||| ||| ||||||  |||||||||||||||    
T  29908487 cgcaagttaagtcacgcagcgtaacttaacttgcgcaagggcatttttggcatagctgcagggcgcgagcaaaatgtgctggatgaagagcaacattc 29908390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 38455155 - 38455004
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||||| ||| |||||||||||||||||||||| ||  |||||    
T  38455155 tgcgtgagttaactcacgctgcgctacttaagtggcgcacaaaatacaacgtgcgcaagttaagacacgctgcgtgacttaacttgcgcaggggcaattt 38455056  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattca 315  Q
    |||||| ||| | |||||  |||||||||||||| |||||||||| ||||||    
T  38455055 aggcaacgctgccgggcgaaagcgaaaagtgctgggtgaagagcagcattca 38455004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 164 - 314
Target Start/End: Complemental strand, 29033261 - 29033111
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||  | |||||||||| ||| |||  |||||||||||||||||||||||||||    
T  29033261 tgcgtgagttaactcacgctgcgctacttaagtggcgcacaaaatacaaagtgcgcaagttaagacacgctatgtgacttaacttgcgcatggataattt 29033162  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||||| |||  || |||||||||||||||||||  |||| |||| |||||    
T  29033161 aggcaacgctgtagagcgcgagcgaaaagtgctggatgaatagcagcattc 29033111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 38458168 - 38458131
Alignment:
Q  29 catttattcaatcaagcattaagtcataagtatattac 66  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  38458168 cattcattcaatcaagcattaagtcataagtagattac 38458131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 27874127 - 27874222
Alignment:
Q  217 cgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacatt 313  Q
    ||||||||||  || || ||||||||||||||||||| ||| | ||| ||||  ||| |||| ||||||| ||| |||||| |||||||||| ||||    
T  27874127 cgcaagttaagccacgcagcgtgacttaacttgcgcaaggacatttttggcatggctgcaggacgcgagcaaaatgtgctg-gtgaagagcagcatt 27874222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 48577357 - 48577507
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||| | |||||||||| ||| | ||||||||||||||||||||||| ||||||    
T  48577357 tgcgtgagttaactcacgctgcgctacttaagtggcacacaaaatacaacgtgcgcaagttaagacacgttgcgtgacttaacttgcgcatgggtaattt 48577456  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    || ||| ||| |||| || ||||||||| ||||| |||||||||| |||||    
T  48577457 agacaacgctgcaggacgtgagcgaaaaatgctgggtgaagagcaccattc 48577507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 25147024 - 25146873
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    |||||||||||||||| | || |||||||||||||| | ||||||||||| | |||||||||| ||| | ||||| |||||||||||||| || ||||||    
T  25147024 tgcgtgagttaactcatgatgcgctacttaagtggcacacaaaatacaacgtgcgcaagttaagacacgttgcgtaacttaacttgcgcaggggtaattt 25146925  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattca 315  Q
    |||||| ||| |||||||||||||||||||| || |||||||||| ||||||    
T  25146924 aggcaacgctgcagggcgcgagcgaaaagtgttgggtgaagagcagcattca 25146873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 163 - 308
Target Start/End: Original strand, 32310305 - 32310450
Alignment:
Q  163 ttgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatt 262  Q
    |||||||||||||||||||||| |||||||||||| | | ||||||||||| | |||||||||| ||| || ||||||||| |||||||   || |||||    
T  32310305 ttgcgtgagttaactcacgctgcgctacttaagtgacacacaaaatacaacgtgcgcaagttaagacacgcagcgtgactttacttgcgttggggtaatt 32310404  T
Q  263 taggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagca 308  Q
    |||| || | | ||||||||||||||||||| ||| ||||||||||    
T  32310405 taggtaacggtgcagggcgcgagcgaaaagtactgggtgaagagca 32310450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 42563131 - 42563249
Alignment:
Q  167 gtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttagg 266  Q
    |||||||||||||||| | |||||||||||  |||  || ||||||||| |||| |||||| || || ||||||||||||||||||| || ||||||  |    
T  42563131 gtgagttaactcacgccgcgctacttaagtcacgcataagatacaacatgcgcaggttaaatcacgcagcgtgacttaacttgcgcaggggtaatttgag 42563230  T
Q  267 caatgctacagggcgcgag 285  Q
    |||||||||||||||||||    
T  42563231 caatgctacagggcgcgag 42563249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 850586 - 850684
Alignment:
Q  167 gtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttag 265  Q
    ||||| |||||||| |||||||||||||||| ||| ||||||||||| | |||||||||| ||| || || |||||||||||||||| || ||||||||    
T  850586 gtgaggtaactcacactgtgctacttaagtgacgcacaaaatacaacgtgcgcaagttaagacacgcagcatgacttaacttgcgcacgggtaatttag 850684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 32305127 - 32305180
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  32305127 tcatcattcattcaagcatttattcaatcaagcattaactcataagtatattac 32305180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 39466124 - 39466072
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatatta 65  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  39466124 tcatcattcattcaagcattcattcaatcaagcattaagtcataagtatatta 39466072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 38131423 - 38131325
Alignment:
Q  217 cgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattca 315  Q
    ||||||||||  ||||| ||||||||||||||||||| ||  | ||| ||||  ||| |||||||||||| ||| |||||| |||||||||||||||||    
T  38131423 cgcaagttaagtcatgcagcgtgacttaacttgcgcaagggcatttttggcatggctgcagggcgcgagcaaaatgtgctgggtgaagagcaacattca 38131325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 48040889 - 48040942
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||||||||||||||||||| |||| | |||||| || |||||    
T  48040889 tcatcattcattcaaacatttattcaatcaaacattcactcataattacattac 48040942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 48576956 - 48576993
Alignment:
Q  29 catttattcaatcaagcattaagtcataagtatattac 66  Q
    |||| |||||||||||||||||||||||||||||||||    
T  48576956 cattcattcaatcaagcattaagtcataagtatattac 48576993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 49286030 - 49286066
Alignment:
Q  272 ctacagggcgcgagcgaaaagtgctgagtgaagagca 308  Q
    |||||||||||||||||||||||||| ||||||||||    
T  49286030 ctacagggcgcgagcgaaaagtgctgggtgaagagca 49286066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 3680028 - 3679973
Alignment:
Q  236 cgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaa 291  Q
    |||||||||||||||||| || ||| || ||| ||||| |||||||||||||||||    
T  3680028 cgtgacttaacttgcgcaagggtaaattgggctatgctgcagggcgcgagcgaaaa 3679973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 21058729 - 21058808
Alignment:
Q  235 gcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    ||||||||||||||||||| || |||||| | ||||||| |||||||||| ||    |||||| ||||||||||| ||||    
T  21058729 gcgtgacttaacttgcgcaagggtaatttggacaatgctgcagggcgcgatcgttttgtgctgggtgaagagcaaaattc 21058808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 34939519 - 34939558
Alignment:
Q  275 cagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  34939519 cagggcgcgagcgaaatgtgctgagtgaagagcaaaattc 34939558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 34440640 - 34440790
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||| | | |||||||| ||| ||||| |||||||||||||||| || ||||||    
T  34440640 tgcgtgagttaactcacgctacgctacttaagtggcgcacaaaatacaacgtgcacaagttaagacacgctgcatgacttaacttgcgcaggggtaattt 34440739  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||||| ||| || ||||||| ||||||||||||| ||||||||| |||||    
T  34440740 aggcaacgctgcaaggcgcgaacgaaaagtgctgaatgaagagcagcattc 34440790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 164 - 294
Target Start/End: Original strand, 29523162 - 29523292
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||| ||||||||||||||| |||||||||||| | | ||||||||||| | |||||||||| |||||| ||||||||||||||||||| || ||||||    
T  29523162 tgcgtaagttaactcacgctgcgctacttaagtgacacacaaaatacaacgtgcgcaagttaagacatgcagcgtgacttaacttgcgcaggggtaattt 29523261  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtg 294  Q
    ||||||  || || |||||||||||||||||    
T  29523262 aggcaacactgcaaggcgcgagcgaaaagtg 29523292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 25574790 - 25574714
Alignment:
Q  238 tgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||||||||||||||| ||  | ||| | ||  ||| |||||||||| | ||| |||||||||||||||||||||||    
T  25574790 tgacttaacttgcgcaagggcatttttgacatggctgcagggcgcgaccaaaatgtgctgagtgaagagcaacattc 25574714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 34437233 - 34437265
Alignment:
Q  34 attcaatcaagcattaagtcataagtatattac 66  Q
    ||||| |||||||||||||||||||||||||||    
T  34437233 attcattcaagcattaagtcataagtatattac 34437265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 46636606 - 46636574
Alignment:
Q  276 agggcgcgagcgaaaagtgctgagtgaagagca 308  Q
    |||||||||||||||||||||| ||||||||||    
T  46636606 agggcgcgagcgaaaagtgctgggtgaagagca 46636574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 164 - 314
Target Start/End: Complemental strand, 44488180 - 44488035
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||  ||     ||||||||||||||| ||||||||||||    
T  44488180 tgcgtgagttaactcacgctgtgctacttaagtggcgcacaaaatataacgtgcgcaagttaagtca-----cgtgacttaacttgcacatggataattt 44488086  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    |||||| | | |||||||||||||||||||| ||  |||||||||||||||    
T  44488085 aggcaacgttgcagggcgcgagcgaaaagtgttggttgaagagcaacattc 44488035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 49000593 - 49000541
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatatta 65  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49000593 tcatcattcattcaaacattcattcaatcaagcattaagtcataagtatatta 49000541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 33296711 - 33296764
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  33296711 tcatcattcattcaagcattcattcaatcaaacattaagtcataagtatattac 33296764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 50907258 - 50907205
Alignment:
Q  238 tgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaa 291  Q
    |||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||    
T  50907258 tgacttaacttgcgcaaggataatttgggctatgctgcagggcgcgagcgaaaa 50907205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 48996763 - 48996715
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaa 212  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  48996763 tgcgtgagttaactcacgctgcactacttaagtggcgcacaaaatacaa 48996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 48996717 - 48996668
Alignment:
Q  267 caatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattcaa 316  Q
    ||||||| |||| |||||||||||||||||| |||||||||| |||||||    
T  48996717 caatgctgcaggacgcgagcgaaaagtgctgggtgaagagcagcattcaa 48996668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 39222672 - 39222588
Alignment:
Q  232 gctgcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattcaa 316  Q
    |||||||||||||||| ||||| ||| | ||| ||||  ||| |||||||||||| ||| |||| | ||||||||||| ||||||    
T  39222672 gctgcgtgacttaactagcgcaaggacatttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcaaaattcaa 39222588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 41871717 - 41871620
Alignment:
Q  217 cgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagcaacattc 314  Q
    ||||||||||  ||||| ||||||||||||||||||| ||  | ||| ||||  |||  ||||||||||| ||| |||||  |||||||||| |||||    
T  41871717 cgcaagttaagtcatgcagcgtgacttaacttgcgcaagggcatttttggcatggctgtagggcgcgagcaaaatgtgctcggtgaagagcagcattc 41871620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 43514927 - 43514960
Alignment:
Q  275 cagggcgcgagcgaaaagtgctgagtgaagagca 308  Q
    ||||||||||||||||||||||| ||||||||||    
T  43514927 cagggcgcgagcgaaaagtgctgggtgaagagca 43514960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 28539498 - 28539454
Alignment:
Q  251 gcatggataatttaggcaatgctacagggcgcgagcgaaaagtgc 295  Q
    |||||| || ||||||||| ||| |||||||||||||||||||||    
T  28539498 gcatgggtattttaggcaaggctgcagggcgcgagcgaaaagtgc 28539454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 44490510 - 44490478
Alignment:
Q  34 attcaatcaagcattaagtcataagtatattac 66  Q
    ||||| |||||||||||||||||||||||||||    
T  44490510 attcattcaagcattaagtcataagtatattac 44490478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 4362362 - 4362506
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||| | | ||||||| ||| | ||||||||||  || ||  |||||||||||||||||| || ||||||    
T  4362362 tgcgtgagttaactcacgctgcgctacttaagtgacacacaaaatataacgtgcgcaagttaaggcacgcaacgtgacttaacttgcgcaagggtaattt 4362461  T
Q  264 aggcaatgctacagggcgcgagcgaaaagtgctgagtgaagagca 308  Q
    |||||| ||| |||||||||||||||||||||||  |||||||||    
T  4362462 aggcaacgctgcagggcgcgagcgaaaagtgctggatgaagagca 4362506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 6288261 - 6288378
Alignment:
Q  164 tgcgtgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataattt 263  Q
    ||||||||||||||||||||| |||||||||||| | | ||||||||||| | |||||||||||||| ||  ||||||||||||||| || |||||||||    
T  6288261 tgcgtgagttaactcacgctgcgctacttaagtgacacacaaaatacaacgtgcgcaagttaaaacacgc-acgtgacttaacttgcacagggataattt 6288359  T
Q  264 aggcaatgctacagggcgc 282  Q
    |||||| |||  |||||||    
T  6288360 aggcaacgctgtagggcgc 6288378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 207 - 308
Target Start/End: Complemental strand, 7526853 - 7526752
Alignment:
Q  207 atacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttaggcaatgctacagggcgcgagcgaaaagtgctgagtgaagag 306  Q
    ||||||| | |||||||||| ||| || ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| || ||||||||    
T  7526853 atacaacgtgcgcaagttaagacacgcagcgtgacttaacttgcgcatggataatttaggcaacgttgcagggtgcgagcgaaaagtgttgggtgaagag 7526754  T
Q  307 ca 308  Q
    ||    
T  7526753 ca 7526752  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 35018565 - 35018512
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  35018565 tcatcattcattcaaacattcattcaatcaagcattaactcataagtatattac 35018512  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 35006896 - 35006782
Alignment:
Q  168 tgagttaactcacgctgtgctacttaagtggcgctcaaaatacaacatacgcaagttaaaacatgctgcgtgacttaacttgcgcatggataatttaggc 267  Q
    ||||||||||||| ||| |||||||||||| ||   |||||||||| | ||||| |||| ||| |    |||||||||||||||||  | ||||||||||    
T  35006896 tgagttaactcacactgcgctacttaagtgacgtaaaaaatacaacgtgcgcaaattaagacacgtaatgtgacttaacttgcgcaaaggtaatttaggc 35006797  T
Q  268 aatgctacagggcgc 282  Q
    || ||| ||||||||    
T  35006796 aacgctgcagggcgc 35006782  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 4362189 - 4362241
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||| |||  ||||||||||||||||| |||||||||||||||    
T  4362189 tcatcattcattcaagcatc-attcaatcaagcattaattcataagtatattac 4362241  T

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Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 28773 - 28826
Alignment:
Q  13 tcatcattcattcaaacatttattcaatcaagcattaagtcataagtatattac 66  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||    
T  28773 tcatcattcattcaagcattcattcaatcaagcattaactcataattatattac 28826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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