View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038_low_3 (Length: 541)
Name: NF5038_low_3
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 12 - 525
Target Start/End: Complemental strand, 41548544 - 41548031
Alignment:
| Q |
12 |
gaacctgtgtcaccttcctccaaccacgtgattcttgatagagacgaagatgatgaagttggagcatttcctatgacaactcttgacttagaaggaatga |
111 |
Q |
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| T |
41548544 |
gaacctgggtcaccttcctccaaccacgtgattcttgatagagacgaagatgatgaagttggagcatttcctatgacaactcttgacttagaaggaatga |
41548445 |
T |
|
| Q |
112 |
ctatcccagatcttgttcaagtattgcttggatctttacagatggaaacttatgaaagagttgaaggtgttttggtgagaagggatttggcactcaaaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41548444 |
ctatcccagatcttgttcaagtattgcttggatctttacagatggaaacttatgaaagagttgaaggtgttttggtgagaagggatttggcactcaaaga |
41548345 |
T |
|
| Q |
212 |
ccagattcaacacttacataagaatgttgaaatggaaagacaacaacttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaaga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41548344 |
ccagattcaacacttacataagaatgttgaaatggaaagacaacaacttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaaga |
41548245 |
T |
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| Q |
312 |
gaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaagccaagacggctgaaaaaactcataataagttgaaacaag |
411 |
Q |
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| T |
41548244 |
gaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaagccaagacggctgaaaaaactcataataagttgaaacaag |
41548145 |
T |
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| Q |
412 |
aaagtaaggaaactattgaatttctaagaaagagaaacgttgggttgaagtgtgaggttgacaggttgaacgnnnnnnngatggaggaagaccatgaact |
511 |
Q |
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| T |
41548144 |
aaagtaaggaaactattgaatttctaagaaagagaaacgttgggttgaagtgtgaggttgacaggttgaacgaaaaaaagatggaggaagaccatgaact |
41548045 |
T |
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| Q |
512 |
tgaagtgttgagac |
525 |
Q |
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| T |
41548044 |
tgaagtgttgagac |
41548031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 41509743 - 41509652
Alignment:
| Q |
262 |
aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
353 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
41509743 |
aaatggagaaacttgcaaggataaaggctgaggaagagttaaagaaaagagaggaaatttttcagaaagggaagaaagtacaagaacgttat |
41509652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 41519969 - 41519878
Alignment:
| Q |
262 |
aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
353 |
Q |
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| T |
41519969 |
aaatggagaaacttgcaaggatacaggccgaggaagagtttaagaaaagagaggaactttgtcagaaagggaagaaagtacaagaacgttat |
41519878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 41515732 - 41515637
Alignment:
| Q |
258 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
353 |
Q |
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|||||| ||||||||||||||||||| | |||||| ||||| ||||||||||| || |||||| ||||| ||||||||| |||||||||||| |
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| T |
41515732 |
cttcaactggagaaactctcaaggttgtacgctgagtctgagtttaagaaaagagaagagatttgtgagaaagggaagaaagttcaagaaagttat |
41515637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 372
Target Start/End: Complemental strand, 41524655 - 41524548
Alignment:
| Q |
265 |
tggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctctt |
364 |
Q |
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|||||||||||||||||||| | |||||| ||||| ||||||||||| || |||||| | ||| ||||||||| |||||||||||| | ||||| || |
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| T |
41524655 |
tggagaaactctcaaggttatatgctgagtctgagtttaagaaaagagaagagatttgtgaaaaagggaagaaagttcaagaaagttatgaagctctttt |
41524556 |
T |
|
| Q |
365 |
gaaggaag |
372 |
Q |
| |
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||| |||| |
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| T |
41524555 |
gaaagaag |
41524548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 41469970 - 41469895
Alignment:
| Q |
297 |
gagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaag |
372 |
Q |
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||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||| | ||||| ||||| |||| |
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| T |
41469970 |
gagtttaagaaaagagaggaaatttgtgagaaaggtaagaaagtaaaagaaagttatgaagctcttttgaaagaag |
41469895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 41509849 - 41509765
Alignment:
| Q |
168 |
agagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagac |
252 |
Q |
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||||||||||||||||||||||| || ||| | | ||||| |||||| | ||||| ||| || |||||||||| ||||| |||| |
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| T |
41509849 |
agagttgaaggtgttttggtgagtagagatgttggactcagagaccaaactcaacgcttgcagcagaatgttgatatggagagac |
41509765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 16638334 - 16638393
Alignment:
| Q |
258 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
317 |
Q |
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||||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||| |
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| T |
16638334 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
16638393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 17457304 - 17457245
Alignment:
| Q |
258 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
317 |
Q |
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||||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||| |
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| T |
17457304 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
17457245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 17595910 - 17595969
Alignment:
| Q |
258 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
317 |
Q |
| |
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||||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||| |
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| T |
17595910 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
17595969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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