View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5038_low_4 (Length: 512)

Name: NF5038_low_4
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5038_low_4
NF5038_low_4
[»] chr7 (1 HSPs)
chr7 (105-494)||(4488186-4488576)
[»] chr3 (3 HSPs)
chr3 (203-491)||(1409606-1409895)
chr3 (105-164)||(1409549-1409608)
chr3 (267-331)||(1402810-1402874)
[»] chr5 (2 HSPs)
chr5 (105-229)||(19023787-19023911)
chr5 (254-327)||(11955361-11955434)
[»] chr8 (1 HSPs)
chr8 (398-494)||(22621884-22621981)
[»] chr4 (1 HSPs)
chr4 (105-164)||(14244855-14244914)
[»] chr2 (1 HSPs)
chr2 (105-164)||(6355405-6355464)
[»] chr1 (1 HSPs)
chr1 (228-327)||(40682223-40682322)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 105 - 494
Target Start/End: Original strand, 4488186 - 4488576
Alignment:
Q  105 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 204  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488186 tatttgaggaagaatccagtttgattttagcactattggtgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 4488285  T
Q  205 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4488286 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcatcacttcctctgccactgcagatgccacatcatctgatt 4488385  T
Q  305 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488386 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat 4488485  T
Q  405 atcttacctttctctgctcacacattttc-taaaaagtagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaac 494  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4488486 atcttacctttctctgctcacacattttcttaaaaggtagaaacatttgatttgtctccaactctatttcctttttgtatgtagctgcaac 4488576  T

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Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 203 - 491
Target Start/End: Original strand, 1409606 - 1409895
Alignment:
Q  203 agtaccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctga 302  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  1409606 agtaccttttaaataagccaccggttgaagctccaacgaccaatttcgttacagcatacttggttacttcctctgccaccgcagatgccacatcatctga 1409705  T
Q  303 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaaca 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1409706 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatcttcatgaagaaca 1409805  T
Q  403 atatcttacctttctctgctcacacattttc-taaaaagtagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgc 491  Q
    ||||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||  |||||||||| |||||||||| ||||||    
T  1409806 atatcttacctttctctgctcacacatttgcttaaaaggtagaagcatttgatttgtctcacactctatttcttttttgtacgcagctgc 1409895  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 1409549 - 1409608
Alignment:
Q  105 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 164  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  1409549 tatttgaggaagaatgcagtttgatcttagaactattggtgataataaatctttattagt 1409608  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 1402810 - 1402874
Alignment:
Q  267 tacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgcacct 331  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||| || |||||||||||||    
T  1402810 tacttcctctgctactgcagttgctacatcatctgattcaatcactactacatctacatgcacct 1402874  T

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Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 19023787 - 19023911
Alignment:
Q  105 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 204  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19023787 tatttgaggatgaatccagtttgatcttggcactattggtgataataaatcattattagtcaaggtagatgctaaaatgattttgctgtcattatagaag 19023886  T
Q  205 taccttttaaataagccacccattg 229  Q
    |||||||||||||||||||||||||    
T  19023887 taccttttaaataagccacccattg 19023911  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 11955361 - 11955434
Alignment:
Q  254 tagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 327  Q
    |||||| ||| | |||||||||||| | ||||| ||| ||||||||| |||||||||||| ||  |||||||||    
T  11955361 tagcatccttaactacttcctctgctattgcagttgctacatcatcttattcaatcactaaaatatctacatgc 11955434  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 398 - 494
Target Start/End: Original strand, 22621884 - 22621981
Alignment:
Q  398 gaacaatatcttacctttctctgctcacacattttctaaaaag-tagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaac 494  Q
    |||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||||||| |||| |||||||||||||||| |||| |||||||||    
T  22621884 gaacaatatcttacctttctatgctcacacatttacttaaaaggtagaagcatttgatttgcctcccactctatttcctttttttacgcagctgcaac 22621981  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 14244855 - 14244914
Alignment:
Q  105 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 164  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14244855 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 14244914  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 6355405 - 6355464
Alignment:
Q  105 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 164  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6355405 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 6355464  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 40682322 - 40682223
Alignment:
Q  228 tgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 327  Q
    ||||||||||| ||| | ||| |||||||||| |||   |||||||||||| | ||||  ||| |||||||||||||||||||||| ||| |||||||||    
T  40682322 tgaagctccaaggacaagtttggttatagcatccttagctacttcctctgctattgcaattgctacatcatctgattcaatcactaaaacatctacatgc 40682223  T

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