View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5038_low_5 (Length: 408)

Name: NF5038_low_5
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5038_low_5
NF5038_low_5
[»] chr8 (5 HSPs)
chr8 (18-367)||(41143559-41143908)
chr8 (77-222)||(41166852-41166997)
chr8 (77-291)||(41151772-41152001)
chr8 (324-367)||(41167103-41167146)
chr8 (84-210)||(11260040-11260166)
[»] chr1 (9 HSPs)
chr1 (18-222)||(32663427-32663631)
chr1 (79-222)||(32585873-32586016)
chr1 (79-222)||(32635642-32635787)
chr1 (79-140)||(32661329-32661390)
chr1 (256-289)||(32635849-32635882)
chr1 (257-289)||(32586079-32586111)
chr1 (257-289)||(32661515-32661547)
chr1 (233-307)||(32638592-32638667)
chr1 (246-290)||(32663858-32663902)
[»] chr6 (2 HSPs)
chr6 (79-367)||(26402042-26402347)
chr6 (94-122)||(26401518-26401546)
[»] chr5 (1 HSPs)
chr5 (266-336)||(17753701-17753772)
[»] chr7 (1 HSPs)
chr7 (264-331)||(45971648-45971716)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 41143559 - 41143908
Alignment:
Q  18 tttcttcttaaaactacatctgtgtcccctacaaaacaatgaaggtttggttgctatggaaaactaacatttcatcaacattaggatggtaaattttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41143559 tttcttcttaaaactacatctgtgtcccctacaaaacaatgaaggtttggttgctatggaaaactcacatttcatcaacattaggatggtaaattttgtt 41143658  T
Q  118 gacaaaaccaatagaaggcgacttataaggataagcatcaggtagctccacttttatcttccatacaccttcttgatatggacctgcaatgagtcgtaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41143659 gacaaaaccaatagaaggcgacttataaggataagcatcaggtagctccactcttatcttccatacaccttcttgatatggacctgcaatgagtcgtaat 41143758  T
Q  218 aaaagagaaggaaataaacccacttcagttccacctttagagatacaattgtgttatttgaacatcaaaatacaaacgcgtatgtgacacttcatatgtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  41143759 aaaagagaaggaaataaacccacttcagttccacctttagagatacaattgtgttatttgagcatcaaaatacaaacgcgtatgtaacacttcatatgtt 41143858  T
Q  318 caactctatctctctcttaactttttaccttctgtaacttacacacattt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41143859 caactctatctctctcttaactttttaccttctgtaacttacacacattt 41143908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 41166852 - 41166997
Alignment:
Q  77 aaaactaacatttcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggcgacttataaggataagcatcaggtagctccacttttatct 176  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||| ||||||    
T  41166852 aaaactcacatctcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggagacttataaggacaaccatcaagtagctccactcttatct 41166951  T
Q  177 tccatacaccttcttgatatggacctgcaatgagtcgtaataaaag 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  41166952 tccatacaccttcttgatatggacctgcaatgagtcctaataaaag 41166997  T

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Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 77 - 291
Target Start/End: Original strand, 41151772 - 41152001
Alignment:
Q  77 aaaactaacatttcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggcgacttataaggataagcatcaggtagctccacttttatct 176  Q
    |||||| ||||| |||| ||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||    
T  41151772 aaaactcacattgcatcgacattaggatggtaaatgtagttgacaaaaccaataaaaggagacttataaggataagcatcgggtagctccactcttatct 41151871  T
Q  177 tccatacaccttcttgatatggacctgcaatgagtc---------------gtaataaaagagaaggaaataaacccacttcagttccacctttagagat 261  Q
    ||||||||||||||||||| ||||||||||||||||               | ||| ||||||||| | | |||||||||||||||||||||||| || |    
T  41151872 tccatacaccttcttgataaggacctgcaatgagtcccaataaaagtgagtgaaatcaaagagaagaagaaaaacccacttcagttccacctttaaagtt 41151971  T
Q  262 acaattgtgttatttgaacatcaaaataca 291  Q
    ||| ||||||||||||||||||||||||||    
T  41151972 acagttgtgttatttgaacatcaaaataca 41152001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 41167103 - 41167146
Alignment:
Q  324 tatctctctcttaactttttaccttctgtaacttacacacattt 367  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  41167103 tatctctctcttaactttttaccttctgtaacttaaacacattt 41167146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 11260166 - 11260040
Alignment:
Q  84 acatttcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggcgacttataaggataagcatcaggtagctccacttttatcttccatac 183  Q
    |||| ||||||||||| || || || || || ||||  ||||| || ||||| |||||||| ||||||||||| |||||||| ||| |||  ||||| ||    
T  11260166 acatctcatcaacatttgggtgatagatcttattgatgaaacctattgaaggagacttatagggataagcatccggtagctcaactcttactttccacac 11260067  T
Q  184 accttcttgatatggacctgcaatgag 210  Q
    |||| ||||||| |||||||| |||||    
T  11260066 acctccttgataaggacctgccatgag 11260040  T

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Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 32663427 - 32663631
Alignment:
Q  18 tttcttcttaaaactacatctgtgtcccctacaaaacaatgaaggtttggttgctatggaaaactaacatttcatcaacattaggatggtaaattttgtt 117  Q
    |||| |||||||||| | || ||||||| || |||||||||||  |||| |||||||  |||||| |||||||| |||||||||||||||||||||||||    
T  32663427 tttcatcttaaaactccttcggtgtcccatagaaaacaatgaaattttgcttgctataaaaaactcacatttcaccaacattaggatggtaaattttgtt 32663526  T
Q  118 gacaaaaccaatagaaggcgacttataaggataagcatcaggtagctccacttttatcttccatacaccttcttgatatggacctgcaatgagtcgtaat 217  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||||||||  |||    
T  32663527 gacaaaaacaatagaagcagacttataaggataagcatcaggtagctccactcttatcttccatatgccttcttgataaggacctgcaatgagtccaaat 32663626  T
Q  218 aaaag 222  Q
    |||||    
T  32663627 aaaag 32663631  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 32585873 - 32586016
Alignment:
Q  79 aactaacatttcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggcgacttataaggataagcatcaggtag---ctccacttttatc 175  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||| |||||||| ||||||||||   ||||||| || ||    
T  32585873 aactcacatttcatcaacattaggatagtaacttttgttgacaaaaccaattgaaggagacttacaaggataaacatcaggtagctcctccactcttgtc 32585972  T
Q  176 ttccatacaccttcttgatatggacctgcaatgagtcgtaataaaag 222  Q
    ||||| ||||   |||||||||||||||||||| |||  ||||||||    
T  32585973 ttccagacac---cttgatatggacctgcaatgcgtcccaataaaag 32586016  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 32635642 - 32635787
Alignment:
Q  79 aactaacatttcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggcgacttataaggataagcatcaggtag---ctccacttttatc 175  Q
    |||| ||||||||||||||||||||| |||| |||||||||| |||||||| ||||| |||||| |||||||| ||||||| ||   ||||||| || ||    
T  32635642 aactcacatttcatcaacattaggatagtaacttttgttgac-aaaccaattgaaggagacttacaaggataaacatcaggaagctcctccactcttgtc 32635740  T
Q  176 ttccatacaccttcttgatatggacctgcaatgagtcgtaataaaag 222  Q
    ||||| |||||||||||||| |||||||| ||| |||  ||||||||    
T  32635741 ttccagacaccttcttgataaggacctgcgatgcgtcccaataaaag 32635787  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 32661329 - 32661390
Alignment:
Q  79 aactaacatttcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggcgact 140  Q
    |||| |||||||||||||||||||||  ||| ||||||||||||||||||| ||||| ||||    
T  32661329 aactcacatttcatcaacattaggataataacttttgttgacaaaaccaattgaaggagact 32661390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 32635849 - 32635882
Alignment:
Q  256 agagatacaattgtgttatttgaacatcaaaata 289  Q
    ||||||||||||||||||||||||||||||||||    
T  32635849 agagatacaattgtgttatttgaacatcaaaata 32635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 32586079 - 32586111
Alignment:
Q  257 gagatacaattgtgttatttgaacatcaaaata 289  Q
    |||||||||||||||||||||||||||||||||    
T  32586079 gagatacaattgtgttatttgaacatcaaaata 32586111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 32661515 - 32661547
Alignment:
Q  257 gagatacaattgtgttatttgaacatcaaaata 289  Q
    |||||||||||||||||||||||||||||||||    
T  32661515 gagatacaattgtgttatttgaacatcaaaata 32661547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 32638592 - 32638667
Alignment:
Q  233 aaacccacttcagttccacctttagagatacaattgtgttatttgaacatcaaaatacaaacgc-gtatgtgacac 307  Q
    |||||||||||||||||||||||| ||  ||| ||||||| |||||  ||||||||||| || | |||||||||||    
T  32638592 aaacccacttcagttccacctttaaagtcacagttgtgttctttgagaatcaaaatacagacactgtatgtgacac 32638667  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 32663858 - 32663902
Alignment:
Q  246 ttccacctttagagatacaattgtgttatttgaacatcaaaatac 290  Q
    ||||||||||| ||  ||| |||||||||||||||||||||||||    
T  32663858 ttccacctttaaagtcacagttgtgttatttgaacatcaaaatac 32663902  T

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Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 79 - 367
Target Start/End: Original strand, 26402042 - 26402347
Alignment:
Q  79 aactaacatttcatcaacattaggatggtaaattttgttgacaaaaccaatagaaggcgacttataaggataagcatcaggtagctccacttttatc-tt 177  Q
    |||| ||||||||||||||||||||| ||||| |||| | ||||| || |||||||| ||||| |||||||||  |||||||||||||||| || || ||    
T  26402042 aactcacatttcatcaacattaggattgtaaactttgataacaaaccccatagaaggagacttgtaaggataaatatcaggtagctccactcttttcttt 26402141  T
Q  178 ccatacaccttcttgatatggacctgcaatgagtcgtaata---------------aaagagaaggaaataaacccacttcagttccacctttagagata 262  Q
    ||||||||||||||||||||||||||||||||||| |||||               ||||||||| | | ||||||||||||||||| ||| || |   |    
T  26402142 ccatacaccttcttgatatggacctgcaatgagtcctaataaaagtgagtgataacaaagagaagaagaaaaacccacttcagttccccctctaaactca 26402241  T
Q  263 caattgtgttatttgaacatcaaaatacaaac-gcgtatgtgacacttcatatgttcaactctatctctctcttaactttttaccttctgtaacttacac 361  Q
    |||||||||||||||| |||||||||||||||   ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |    
T  26402242 caattgtgttatttgagcatcaaaatacaaacattgtatgcgacactttatatgctcaactctatctctctcttaactttttaccttctgcaacttacgc 26402341  T
Q  362 acattt 367  Q
    ||||||    
T  26402342 acattt 26402347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 26401518 - 26401546
Alignment:
Q  94 aacattaggatggtaaattttgttgacaa 122  Q
    |||||||||||||||||||||||||||||    
T  26401518 aacattaggatggtaaattttgttgacaa 26401546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 17753701 - 17753772
Alignment:
Q  266 ttgtgttatttgaacatcaaaatacaaacg-cgtatgtgacacttcatatgttcaactctatctctctctta 336  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||   ||||||  | ||||||||||||||||    
T  17753701 ttgtgttatttgaacatcaaaaaacatacgccgtatgtgacaccatatatgtctatctctatctctctctta 17753772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 45971648 - 45971716
Alignment:
Q  264 aattgtgttatttgaacatcaaaatacaaa-cgcgtatgtgacacttcatatgttcaactctatctctc 331  Q
    |||| |||||||||||||||||||||||||   |||||||||||  | ||||||| | |||||||||||    
T  45971648 aattatgttatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctatctctc 45971716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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