View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038_low_6 (Length: 352)
Name: NF5038_low_6
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 53557259 - 53556983
Alignment:
| Q |
5 |
cagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacatacatatatataatctaagaagtactagtaa |
104 |
Q |
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| T |
53557259 |
cagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacatacatata----atctaagaagtactagtaa |
53557164 |
T |
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| Q |
105 |
ttacaaaaattaagnnnnnnnntatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagca |
204 |
Q |
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| T |
53557163 |
---caaaaattaagaaaaaaaatatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagca |
53557067 |
T |
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| Q |
205 |
tcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatcttttttgtattgttaaga |
288 |
Q |
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| T |
53557066 |
tcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacagcatggagctctacccatcttttttgtattattaaga |
53556983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 53556965 - 53556926
Alignment:
| Q |
306 |
gaaattaggtttaatt-ctctccttgagatgatgatgatg |
344 |
Q |
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| T |
53556965 |
gaaattaggtttaatttctctccttgagatgatgatgatg |
53556926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 130 - 278
Target Start/End: Complemental strand, 4685489 - 4685341
Alignment:
| Q |
130 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt |
229 |
Q |
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| T |
4685489 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt |
4685390 |
T |
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| Q |
230 |
tcttcacgttagccttgtcacaacatggagctctacccatcttttttgt |
278 |
Q |
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| T |
4685389 |
tcttcacgtttgctttgtcacaacaaggagctctacccatgtttgttgt |
4685341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 4612012 - 4612088
Alignment:
| Q |
193 |
ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccat |
269 |
Q |
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| T |
4612012 |
ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat |
4612088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
| Q |
142 |
tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag |
241 |
Q |
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| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg |
5113196 |
T |
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| Q |
242 |
ccttgtcacaacatggagctctacccat |
269 |
Q |
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| T |
5113195 |
ctttgtcacagcaaggagctcttcccat |
5113168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 269
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
| Q |
138 |
tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg |
237 |
Q |
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|||||||||||||| |||||||||||| |||||||||| |||| || || |||||| | | ||||||||| || ||||| |||||||||||||| |
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| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca |
40820203 |
T |
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| Q |
238 |
ttagccttgtcacaacatggagctctacccat |
269 |
Q |
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|| || |||||||| || |||||||| ||||| |
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| T |
40820204 |
tttgctttgtcacagcaaggagctcttcccat |
40820235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 275
Target Start/End: Original strand, 41208793 - 41208920
Alignment:
| Q |
148 |
agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt |
247 |
Q |
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|||| |||||| |||||||||||||||| | | || ||||| || ||| | |||||||||||||||||||| || |||||||| || ||||| |||| |
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| T |
41208793 |
agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt |
41208892 |
T |
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| Q |
248 |
cacaacatggagctctacccatcttttt |
275 |
Q |
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|||| || |||| ||| ||||| ||||| |
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| T |
41208893 |
cacagcaaggagatcttcccattttttt |
41208920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 47847050 - 47847119
Alignment:
| Q |
203 |
catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatctt |
272 |
Q |
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| T |
47847050 |
catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccatctt |
47847119 |
T |
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