View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038_low_7 (Length: 342)
Name: NF5038_low_7
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 29940211 - 29940093
Alignment:
| Q |
11 |
atcatcaaaatatgactccatcttcttataagttataactataagttgttgcttcaatacatacctcaagacagtgtattatttgacttcatgccacatt |
110 |
Q |
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| T |
29940211 |
atcatcaaaatatgactccatcttcttataagttataactataagttgttgcttcaatacatatctcaagacagtgtattatttgacttcatgccacatt |
29940112 |
T |
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| Q |
111 |
cagggcctgtttgaatgag |
129 |
Q |
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| T |
29940111 |
cagggcctgtttgaatgag |
29940093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 29940027 - 29939897
Alignment:
| Q |
195 |
ctcttatctacaacactcattaaaattggattattttctgtccaaaactacttacaacttctcattttaatnnnnnnnttattctgattaatttcttttc |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29940027 |
ctcttatctacaacactcattaaaattggattattttctgtccaaaactacttacaacttctcattttaataaaaaaattattctgattaatttcttttc |
29939928 |
T |
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| Q |
295 |
cctcggagcactcgttagcggaaccctatat |
325 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29939927 |
cctcggagcactcgttagcggaaccctatat |
29939897 |
T |
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