View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5038_low_9 (Length: 252)
Name: NF5038_low_9
Description: NF5038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5038_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53557304 - 53557539
Alignment:
| Q |
1 |
tatactacgagaaaattatgtgaaatctatctctaattttgtagtatatggaaacttgaaactattttgattataatagtaatcttggattagtgcaaac |
100 |
Q |
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| T |
53557304 |
tatactacgagaaaattatgtgaaatctatctctaattttgtagtatatggaaacttgaaactattttgattataatagtaatcttggtttagtgcaaac |
53557403 |
T |
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| Q |
101 |
taattaatgggataattacaaaaaattcacagggctcaagagatgtggaaagagttgcagacttaggtggttaaattacttgagacctaatatcaaacat |
200 |
Q |
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| T |
53557404 |
taattaatgggataattacaaaaaattcacagggctcaagagatgtggaaagagttgcagacttaggtggttaaattacttgagacctaatatcaaacat |
53557503 |
T |
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| Q |
201 |
ggtggatttactgaagaagaagacaacatcatttgc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
53557504 |
ggtggatttactgaagaagaagacaacatcatttgc |
53557539 |
T |
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