View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-12 (Length: 437)
Name: NF5039-Insertion-12
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 8905884 - 8905489
Alignment:
| Q |
8 |
cattcttagctaaagtgtctgcaacaatattcccctccctaagagtgtgcataaaagagcaattaatacttttgcaaaagctcaaacagtttagccatct |
107 |
Q |
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| T |
8905884 |
cattcttagctaaagtgtctgcaacaatattcccctccctaagagtgtgcataaaagagcaatttatacttttgcaaaagctcaaacagtttagccatct |
8905785 |
T |
|
| Q |
108 |
gcttctcatcttccaaggcactccaatattcttgttataagctttaaacacctgtaaagagttagtttccagacagatttgagttaagggcatatctcta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
8905784 |
gcttctcatcttccaaggcactccaatattcttgttataagctttaaacacctgtaaagagtcagtttccagacagatttgagttaagagcatatctcta |
8905685 |
T |
|
| Q |
208 |
gccttttcaatggccatcatacaggcagagaattctgcttcaatagcagaagcatgacctatattactagcaaaagctcccaagaaattggccctctaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8905684 |
gccttttcaatggccatcatacaggcagagaattctgcttcaatagcagaagcatgacctatattactagcaaaagctcccaagaaattggccctgtaat |
8905585 |
T |
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| Q |
308 |
ctctgaaaacaataccaatcgcaccataaggctgggtacctacagaggatccatcacagttaattttaatagtattataagggggtggacaccaat |
403 |
Q |
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| T |
8905584 |
ctctgaaaacaataccaatcgcaccacaaggctggttacctatagaggatccatcacagttaattttaatagtattataagggggtggacaccaat |
8905489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 39873825 - 39873872
Alignment:
| Q |
102 |
ccatctgcttctcatcttccaaggcactccaatattcttgttataagc |
149 |
Q |
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| T |
39873825 |
ccatctggttctcatcttccaaggcactccaatgttcttgttgtaagc |
39873872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 6905589 - 6905661
Alignment:
| Q |
217 |
atggccatcatacaggcagagaattctgcttcaatagcagaagcatgacctatattactagcaaaagctccca |
289 |
Q |
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| T |
6905589 |
atggccagcatacaggcagagaattctgcttctaaagctgtggcatgacctatattgctggctatagctccca |
6905661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 23059910 - 23059951
Alignment:
| Q |
102 |
ccatctgcttctcatcttccaaggcactccaatattcttgtt |
143 |
Q |
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| T |
23059910 |
ccatctgattctcatcttccaaggcactccaatgttcttgtt |
23059951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 22215854 - 22215809
Alignment:
| Q |
232 |
gcagagaattctgcttcaatagcagaagcatgacctatattactag |
277 |
Q |
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||||||||||||||||||| ||||| |||||| ||||| ||||||| |
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| T |
22215854 |
gcagagaattctgcttcaagagcagtagcatgccctatgttactag |
22215809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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