View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-13 (Length: 388)
Name: NF5039-Insertion-13
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 60 - 380
Target Start/End: Complemental strand, 42339652 - 42339332
Alignment:
| Q |
60 |
tagaaccttgacaaacctacaaacaaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaag |
159 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42339652 |
tagaaccttgacaaacctacaaacaaaagaaagtttcaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaag |
42339553 |
T |
|
| Q |
160 |
actgttgaatcgacctctaccaccgcttcctcttccactgctcgatctaccaccatcaaagcatttcgatatagattgagccataagtaacgtctcttgt |
259 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
42339552 |
actgttgaatcgacctctaccaccacttcctcttccactgctcgttctaccaccatcaaagcatttcaaattagattgagccataagtaacgtctcttgt |
42339453 |
T |
|
| Q |
260 |
tggtctttcaagcatttcttttctattaggacctcacgttggtagtaggctatacgaccgttgtacattgcaattgtcctatcgatgttctctatttctt |
359 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42339452 |
tggtcttccaagcatttcttttctattaggacctcacgttggtagtaggttatacgactgttgtacattgcaattgtcctatcgatgttctctatttctt |
42339353 |
T |
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| Q |
360 |
ctttgatttccagtatttctt |
380 |
Q |
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||||||||||||||||||||| |
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| T |
42339352 |
ctttgatttccagtatttctt |
42339332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 42339831 - 42339758
Alignment:
| Q |
84 |
aaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaa |
158 |
Q |
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|||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
42339831 |
aaaagaaaatttcaacataaaaaaacaaataggatgctatcagcaaaacagtagtacgac-agaaaaagaggaaa |
42339758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 42339869 - 42339836
Alignment:
| Q |
61 |
agaaccttgacaaacctacaaacaaaagaaaatt |
94 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
42339869 |
agaaccttgacaaaccgacaaacaaaagaaaatt |
42339836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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