View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-14 (Length: 244)
Name: NF5039-Insertion-14
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 51874709 - 51874945
Alignment:
| Q |
8 |
ctaagaacacaaaatataacattgccattaacgtattgttccgccatatctgttactcttcatgttcctttgaattttcttcttgtgatccatttcaaaa |
107 |
Q |
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| T |
51874709 |
ctaagaacacaaaatataacattgccattaacgtattgttcagccatatctgttactcttcatgttcctttgaattttcttcttgtgatccatttcaaaa |
51874808 |
T |
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| Q |
108 |
tgggtgttgcaggggtggcaatagcaatgatttggttcaatctcaaccttttgattttcctttcatcttttgtatttttctcacgtgtttataaagattc |
207 |
Q |
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| T |
51874809 |
tgggtgttgcaggggtggcaatagcaatgatttggttcaatctcaaccttttgattttcctttcatcttttgtatttttctcacgtgtttataaagattc |
51874908 |
T |
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| Q |
208 |
atgggtttttcctagtattgattgtctcaaaggttgg |
244 |
Q |
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| T |
51874909 |
atgggtttttcctagtattgattgtctcaaaggttgg |
51874945 |
T |
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Back To:
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 28506033 - 28505920
Alignment:
| Q |
98 |
catttcaaaatgggtgttgcaggggtggcaatagcaatgatttggttcaatctcaaccttttgattttcctttcatcttttgtatttttctcacgtgttt |
197 |
Q |
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| T |
28506033 |
catttccaaatggggattgcaggggtgtcaatagcaatggttttgacaaatttaaaccttgttattttactttcatcttttttatacttctctagtgttt |
28505934 |
T |
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| Q |
198 |
ataaagattcatgg |
211 |
Q |
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| T |
28505933 |
ataaaaagtcatgg |
28505920 |
T |
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