View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039-Insertion-15 (Length: 366)
Name: NF5039-Insertion-15
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-15 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] scaffold0536 (3 HSPs) |
| | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 48912391 - 48912749
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48912391 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
48912490 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912491 |
ttccaatgatcacgtggccgatgcatggagaacagttttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
48912590 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912591 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
48912690 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912691 |
atcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
48912749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 48958274 - 48957955
Alignment:
| Q |
11 |
tgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttc |
110 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || ||||||| |
|
|
| T |
48958274 |
tgggccccacaagttttgattctgagccacattgccgtgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttc |
48958175 |
T |
|
| Q |
111 |
caatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggag |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||| || |||||||||||||| |||||||| || ||| | |
|
|
| T |
48958174 |
caatgatcacgtggccggtgcatggagaacaattctacaatgagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtg |
48958075 |
T |
|
| Q |
211 |
cacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatc |
310 |
Q |
| |
|
|| ||| ||| ||| | | ||||| | || | | |||| ||| || |||| ||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
48958074 |
tgtaaacggttttgaggagaaacagaagattgtgagtaaagatagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatc |
48957975 |
T |
|
| Q |
311 |
agacaacatgctcgagagtt |
330 |
Q |
| |
|
| ||| | ||||| |||||| |
|
|
| T |
48957974 |
aaacagcgtgctcaagagtt |
48957955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 48965462 - 48965104
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | || |||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| |||| |||| |
|
|
| T |
48965462 |
ggttgggctccgcaggttctgattctgagccaccccgctgtgggtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcggggg |
48965363 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||| ||||| || || |||||||| | |||| |||||||| ||||| || |||||||| ||||| |
|
|
| T |
48965362 |
ttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatg |
48965263 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
| | |||||| ||| |||||||||||| |||| | || |||| || ||||||| ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
48965262 |
gtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaa |
48965163 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
|| ||| | ||||| ||||||||| || || |||| || || ||| |||||||||| |
|
|
| T |
48965162 |
attagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaagaaggtgg |
48965104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 48974209 - 48974062
Alignment:
| Q |
50 |
ggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttaca |
149 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||| || || || |||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
48974209 |
ggtgcattcttgacacattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctaca |
48974110 |
T |
|
| Q |
150 |
atgagaagttgataacacaggtgcatgggattggggtggaggtcggtg |
197 |
Q |
| |
|
| |||||||||||||| ||||||| || ||||| |||||||| |||| |
|
|
| T |
48974109 |
acgagaagttgataactcaggtgcggggtattggtgtggaggttggtg |
48974062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 48961423 - 48961267
Alignment:
| Q |
11 |
tgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattc--cactgttgaggcagttagtgcaggggt |
108 |
Q |
| |
|
||||| ||||| |||||||| ||| |||||||||| ||||||| |||||||| ||||| |||||||| || ||| ||||||| | |||||||||| | |
|
|
| T |
48961423 |
tgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggat |
48961324 |
T |
|
| Q |
109 |
tccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataac |
165 |
Q |
| |
|
|||||||| || ||||| | |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
48961323 |
cccaatgataacatggcccgtacatggagaacaattctacaacgagaagttgataac |
48961267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 48951288 - 48951185
Alignment:
| Q |
96 |
ttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcgg |
195 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||| | || || || |||||||||||| | ||||| || |||| |||||| || ||||| || || |
|
|
| T |
48951288 |
ttagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtagg |
48951189 |
T |
|
| Q |
196 |
tgca |
199 |
Q |
| |
|
|||| |
|
|
| T |
48951188 |
tgca |
48951185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 48967323 - 48967233
Alignment:
| Q |
276 |
gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||| ||||||||| ||||| || || |||| || ||| || |||||||||| |
|
|
| T |
48967323 |
gattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtgg |
48967233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 33396779 - 33396687
Alignment:
| Q |
60 |
tgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatg |
152 |
Q |
| |
|
||||||||||||| |||||||| || | || | ||| ||||||||| | |||||| | || ||||| ||| |||| |||||||||||||||| |
|
|
| T |
33396779 |
tgacacattgtggatggaattcaacattggaaggagtgagtgcagggttaccaatggtgacatggccaatgtatggtgaacaattttacaatg |
33396687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 6557 - 6900
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6557 |
ggttgggctccacaagttatgattttgagccacaaagctctgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcagggg |
6656 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||| || ||| | || || |
|
|
| T |
6657 |
ttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtg |
6756 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||| | |||||||||| ||||||| |||||||||||| |
|
|
| T |
6757 |
gagttcaactggtattggggagagagagaaggtggtggggagggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaa |
6856 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagctaaacatgc |
351 |
Q |
| |
|
|||| | | ||||||||||||||||||| || ||||||||||| |
|
|
| T |
6857 |
atcaaaaagtatgctcgagagtttggggataaggctaaacatgc |
6900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 10539 - 10877
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
10539 |
ggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattccaccgtggaggcggttagtgcagggg |
10638 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||| || |||||| || || |
|
|
| T |
10639 |
ttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgataacgcaagtgcgggggattgggggggaagtgggtgcagtagagtg |
10738 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
| || | |||||||||||| | ||||||| |||| |||||||| ||||||||||||||||||| |||||||||||| | || ||| |||||||| | |
|
|
| T |
10739 |
gtgcttagttggtattggggagaaagagaagttggtcgggagggatggtattgagaaggttgtgaagagattgatggacaatagttatgtagctgagata |
10838 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagctaaa |
346 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
10839 |
atcagacgacatgctcgagagtttggggataaggctaaa |
10877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 1541 - 1690
Alignment:
| Q |
50 |
ggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttaca |
149 |
Q |
| |
|
||||||||| ||||||||||||||||||| || | ||||| ||||||||||| ||||||||||||| ||||| | ||| | || ||||| || | |
|
|
| T |
1541 |
ggtgcatttttgacacattgtgggtggaactctataaccgaggctgttagtgcaggaattccaatgatcacatggccagtacatagtgatcaattctata |
1640 |
T |
|
| Q |
150 |
atgagaagttgataacacaggtgcatgggattggggtggaggtcggtgca |
199 |
Q |
| |
|
| || | ||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
1641 |
acgaaacgttgataactcaggtgcatgggattggagtggaagtcggtgca |
1690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 13448496 - 13448138
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||| | || ||||| | ||||||||| ||||| ||| |||| || || || ||||| |||||||| || | |
|
|
| T |
13448496 |
ggttgggccccacaggttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggag |
13448397 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| ||||| ||||||||||| |||||||||| | | || ||||| || || ||||||||||| ||||| |
|
|
| T |
13448396 |
ttccaatgataacgtggccggttcatggagatcaattctacaatgagaaactgataacacaattccgaggaattggagttgaagtcggtgcaacagaatg |
13448297 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
| | || | |||| | | ||| ||| ||||| | || | || |||| || ||||||| ||| | | ||||||||||| |||||||||||||||| || |
|
|
| T |
13448296 |
gtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaat |
13448197 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
||||| | || ||||||||||||||| || ||||||| ||| || ||| |||||||||| |
|
|
| T |
13448196 |
atcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaagaaggtgg |
13448138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 13440333 - 13439975
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||| ||||| |||| ||| |||||||| | || ||||| | ||||||||| ||||| ||| |||| || | ||| ||| | |||||||| || | |
|
|
| T |
13440333 |
ggttgggccccacaagttaagatattgagccaccctgcggtggggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggag |
13440234 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| ||||| ||||| ||||| || ||||||| | | || ||||| ||||| ||||||||||||||||| |
|
|
| T |
13440233 |
ttccaatgataacgtggccggttcatggagatcaattctacaacgagaaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatg |
13440134 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
| | | | |||| ||| ||| ||||||||| |||| | |||||||| || ||||||| ||||| | |||||||||| | ||||||||||||| | || |
|
|
| T |
13440133 |
gtgtaagaatggtgttgcggagagagagaagttggtgagcagggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaat |
13440034 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
|| || | || ||||| ||||||||| || || |||| ||| || ||| |||||||||| |
|
|
| T |
13440033 |
atgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaagaaggtgg |
13439975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 366
Target Start/End: Complemental strand, 13454868 - 13454609
Alignment:
| Q |
107 |
gttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaat |
206 |
Q |
| |
|
||||||||||| |||||||| | |||||||| ||||| ||||| ||||| | |||||||| || | || ||||| | || ||||||||||| |||| |
|
|
| T |
13454868 |
gttccaatgataacgtggccagtccatggagatcaattctacaacgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaat |
13454769 |
T |
|
| Q |
207 |
ggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaa |
306 |
Q |
| |
|
|| | |||| |||| ||| ||| ||||||||| |||| | | |||| || ||||||| ||||| | ||||||||| | |||||||||||||| | || |
|
|
| T |
13454768 |
ggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaa |
13454669 |
T |
|
| Q |
307 |
aatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
||||| || ||||||||||||||| || || |||| ||| || ||| || ||||||| |
|
|
| T |
13454668 |
tatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaaaaggtgg |
13454609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 12590218 - 12590411
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||| ||||| || |||||| ||||||||| || ||||| || ||||||||||||||||| ||||||||| || ||||| |||||||| || |
|
|
| T |
12590218 |
ggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattccgtcgtggaggcggttagtgctggaa |
12590317 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaac |
201 |
Q |
| |
|
|||| |||||||| ||||| || |||| ||||| ||||||||||||||||||||||| | |||||||| ||||| ||||| || |||||||| |
|
|
| T |
12590318 |
ttccgatgatcacatggccattgaatggtgaacatttttacaatgagaagttgataactgatgtgcatggaattggagtggaagttggtgcaac |
12590411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 12483516 - 12483706
Alignment:
| Q |
11 |
tgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttc |
110 |
Q |
| |
|
||||| |||||||| ||||| |||||||| | || ||||||||||||||||| || ||||| |||||||| ||| || || |||||||||||| ||| |
|
|
| T |
12483516 |
tgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttgtggaagcggttagtgcagggattc |
12483615 |
T |
|
| Q |
111 |
caatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaac |
201 |
Q |
| |
|
||||||||||||||||| | || || ||||| |||||||||||||| | ||||| | |||| |||||||| ||||| ||||||||||| |
|
|
| T |
12483616 |
caatgatcacgtggccggttcacggtgaacatttttacaatgagaaactcataactaatgtgcgagggattggtgtggaagtcggtgcaac |
12483706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 3417573 - 3417931
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||| | || || || | ||||||||||||||||||| |||| || ||||||||| ||| ||||||| | |
|
|
| T |
3417573 |
ggttgggccccacaggttcagatattgagccaccctgcggtagggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggag |
3417672 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||| | ||||||||| | |||||||| || | || ||||| ||||| || |||||||| ||||| |
|
|
| T |
3417673 |
ttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatg |
3417772 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
| | || |||||||||||| ||| ||||| |||| | || ||| | || ||||||| ||| | |||||||||||||| ||||||| ||||| |
|
|
| T |
3417773 |
gcgtgcacatggtattggggagagaaagaagttggtgagcagagatgacatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggt |
3417872 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
|| |||| || |||||||||| |||| ||||| ||||||| || ||| |||||||||| |
|
|
| T |
3417873 |
atgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtgg |
3417931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 12540818 - 12540482
Alignment:
| Q |
8 |
ggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcagggg |
107 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||| | || ||||| | ||||||||||||||||||| | || || | ||| ||||| ||| |||| || | |
|
|
| T |
12540818 |
ggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggag |
12540719 |
T |
|
| Q |
108 |
ttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatg |
207 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || || | ||| ||||| | ||||||||||| | || ||||| || || || |||||||| ||||| |
|
|
| T |
12540718 |
ttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatg |
12540619 |
T |
|
| Q |
208 |
gagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaa |
307 |
Q |
| |
|
| | |||| ||||| |||||| ||| ||||| ||||| | || ||| || ||||||| | ||| | |||||||||| ||||| |||||||||| || |
|
|
| T |
12540618 |
gtgtacaaatggtaatggggagagaaagaagttggttggcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaat |
12540519 |
T |
|
| Q |
308 |
atcagacaacatgctcgagagtttggggagaaagcta |
344 |
Q |
| |
|
|| |||| || ||| |||||| |||| ||||| |||| |
|
|
| T |
12540518 |
atgagactacgtgcacgagagattggagagaaggcta |
12540482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 366
Target Start/End: Complemental strand, 28385296 - 28385109
Alignment:
| Q |
179 |
attggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgat |
278 |
Q |
| |
|
||||| ||||| || |||| |||||||||| | |||| ||||| |||||| ||| ||||| |||| | || ||||| || ||||||| | ||| | || |
|
|
| T |
28385296 |
attggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagataacatagagaaggctatgaggaaat |
28385197 |
T |
|
| Q |
279 |
tgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
366 |
Q |
| |
|
|||||||| |||| ||||||||||| || || ||||||| |||||||||||| || ||||| |||| || || ||||||||||||| |
|
|
| T |
28385196 |
tgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtgg |
28385109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 12641530 - 12641720
Alignment:
| Q |
11 |
tgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttc |
110 |
Q |
| |
|
||||| ||||| || |||||| | |||||| | || ||||||||||| ||||| ||||| |||| ||| ||| || ||||| |||||||||||| ||| |
|
|
| T |
12641530 |
tgggccccacaagtaatgattttaagccacgctgctgtgggtgcattcatgacgcattgcgggtcgaactccttggtagaggctgttagtgcagggattc |
12641629 |
T |
|
| Q |
111 |
caatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaac |
201 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || || ||||||||| ||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
12641630 |
caatgatcacgtggccagtgcaaggagaacagttctataatgagaagctgataactgttgtgcgaaggattggggtggaggtgggtgcaac |
12641720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 351
Target Start/End: Original strand, 12641771 - 12641870
Alignment:
| Q |
252 |
ataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgc |
351 |
Q |
| |
|
||| ||| ||||| | ||||| | ||||||||||| ||||||||||||| || |||||||||||| ||||| |||||||||| | || |||| |||||| |
|
|
| T |
12641771 |
atagtatagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgc |
12641870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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