View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-16 (Length: 360)
Name: NF5039-Insertion-16
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 43119450 - 43119096
Alignment:
| Q |
8 |
tgaatatcatcaattacttgttta--atccagctcaaaaataacattactcaaaactgaagctaaaatttattgcagagctttatataaactccaagatt |
105 |
Q |
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| T |
43119450 |
tgaatatcatcaactacttgtttacaatccaggtcaaaaataacattactcaaaactgaagctaaaatttattgcatagctttatataaactccaagatt |
43119351 |
T |
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| Q |
106 |
cacatttaacatcttaaaaagttaaaacttcatacaataccaattccatcttgccatcacaagttggccttggtcatctctcacacacatatcaatactt |
205 |
Q |
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| T |
43119350 |
cacatgtaacatcttaaaaagttaaaacttcatacaataccaattccatcttgccatcacaagttggccttggtcatctctcacacacatatcagcactt |
43119251 |
T |
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| Q |
206 |
gaacatgatgttgttgaaaaataactctatcaacattacatttgaagaagccaaatggagttgattccgaaaaaatgttaggagtgtgtgaattggactt |
305 |
Q |
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| T |
43119250 |
gaacatgatgttgttgaaaaataactctatcaacattacatttgaagaagtcaaatggagttgattccgaaaaaatgttaggagtgtgtgaattggactt |
43119151 |
T |
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| Q |
306 |
agtctagtgatgatattgtgctgcgaagagtgtagcaagtcttaagctcagataa |
360 |
Q |
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| T |
43119150 |
agtctagtgatgatattgtgatgcgaagagtgtagcaagtcttaagctcagataa |
43119096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 281
Target Start/End: Original strand, 6783944 - 6784179
Alignment:
| Q |
38 |
ctcaaaaataacattactcaaaactgaagctaaaatttattgcagagctttatataaactccaagattcacatttaacatcttaaaaagttaaaacttca |
137 |
Q |
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| T |
6783944 |
ctcaaaaataacattactcaaaactgaagctaaaattcattgtagagccagatataaactc-aagattcacatttaacctcctaaaa--------cttca |
6784034 |
T |
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| Q |
138 |
tacaataccaattccatcttgccatcacaa-gttggccttggtcatctctcacacacatatcaatacttgaacatgatgttgttgaaaaataactctatc |
236 |
Q |
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| T |
6784035 |
tgcaataccaatcccatctggccatcataaagttcaccctgatcatctttcacacacatttcagtactggaacaagatgttgttgaaaaataactctatc |
6784134 |
T |
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| Q |
237 |
aacattacatttgaagaagccaaatggagttgattccgaaaaaat |
281 |
Q |
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| T |
6784135 |
aacattacatttgaagaagccaaatggagatggttccgaaaaaat |
6784179 |
T |
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