View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039-Insertion-17 (Length: 263)
Name: NF5039-Insertion-17
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-17 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 20751208 - 20751464
Alignment:
| Q |
7 |
attttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcaca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20751208 |
attttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcaca |
20751307 |
T |
|
| Q |
107 |
aaggcttgaaactggtgtacnnnnnnnntgagcattcacctcaccaagtccacaacaagcatctttcacgtctttaaatcctgaaaagagggtataaaat |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20751308 |
aaggcttgaaactggtgtacaaaaaaattgagcattcagctcaccaagtccacaacaagcatctttcacgtctttaaatcctgaaaagagggtataaaat |
20751407 |
T |
|
| Q |
207 |
taaagtcataaaaatgtcactctgatcacaacaatccaataaacattttacttcata |
263 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20751408 |
taaagtcataaaaatgtcattctcatcacaacaatccaataaacattttacttcata |
20751464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 20755713 - 20755898
Alignment:
| Q |
7 |
attttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcaca |
106 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||| | || ||||||||||||||||||| | | |||||||||| ||||||||||||||||| | ||| |
|
|
| T |
20755713 |
attttgaaggtccattataaagtttatccacaaaagtgcgtgtggctgcctcagtaggatgaaattgatcccaaaatatatggtcttgtctattagaaca |
20755812 |
T |
|
| Q |
107 |
aaggcttgaaactggtgtacnnnnnnnntgagcattcacctcaccaagtccacaacaagcatctttcacgtctttaaatcctgaaa |
192 |
Q |
| |
|
|| | |||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
20755813 |
aatgattgaaattggtgtacacagaaattgagaattcaattcaccaagtccacaacaagcatctttcacatctgcaaatcctgaaa |
20755898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 20799539 - 20799632
Alignment:
| Q |
15 |
ggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcacaaa |
108 |
Q |
| |
|
|||||||| ||||||||||| |||| || || | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
20799539 |
ggtccattataaagtctatcgacaattatgcgagttactgcctcagtaggatggactgaatcccaaaagatatggtcttgtctattggtacaaa |
20799632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University