View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-18 (Length: 288)
Name: NF5039-Insertion-18
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-18 |
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| [»] chr5 (6 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 8528754 - 8528480
Alignment:
| Q |
17 |
aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttat |
116 |
Q |
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| T |
8528754 |
aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttat |
8528655 |
T |
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| Q |
117 |
attttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaagg |
216 |
Q |
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| T |
8528654 |
attttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaagg |
8528555 |
T |
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| Q |
217 |
ttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttag |
288 |
Q |
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| T |
8528554 |
ttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgttgtatatatttgttatatttttag |
8528480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
| Q |
17 |
aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt |
114 |
Q |
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| T |
8535294 |
aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt |
8535195 |
T |
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| Q |
115 |
atattttaaact |
126 |
Q |
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| T |
8535194 |
atattttaaact |
8535183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 8535122 - 8535047
Alignment:
| Q |
216 |
gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttag |
288 |
Q |
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| T |
8535122 |
gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttag |
8535047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
| Q |
17 |
aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta |
115 |
Q |
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| T |
8548409 |
aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta |
8548508 |
T |
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| Q |
116 |
tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtta |
170 |
Q |
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| T |
8548509 |
ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta |
8548562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 9075019 - 9075109
Alignment:
| Q |
34 |
ttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cacttatattttaa |
123 |
Q |
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| T |
9075019 |
ttccgtacaagtcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttcttatgttaccacttatattttaa |
9075109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
| Q |
21 |
tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt |
90 |
Q |
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| T |
1600601 |
tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt |
1600670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 9442915 - 9442630
Alignment:
| Q |
17 |
aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttat |
116 |
Q |
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| T |
9442915 |
aatctgatggttgatgcttctttacaagtcatagtaattgattgtaatcatgagatgagtattcaaagggacttgtgtaagtttcctatgttacacttat |
9442816 |
T |
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| Q |
117 |
attttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttg-------- |
208 |
Q |
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| T |
9442815 |
attttaaacttactattttgccattccatttggagaaaagaaaacatgttgttaggttacttcggttgatatattctcacaacgacatgttggagacatg |
9442716 |
T |
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| Q |
209 |
---gagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttag |
288 |
Q |
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| T |
9442715 |
ttggagaaaggttgtgatgtttcgtcaatcatttgctttcgcagctaatatatttatgatgttgtatatatttgttatatttttag |
9442630 |
T |
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