View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-24 (Length: 133)
Name: NF5039-Insertion-24
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-24 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 1e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 38316115 - 38316245
Alignment:
| Q |
8 |
ccaataattatatcttttatattttttgtttt-ataacttcatggatgttgagattacgactctgt----agtctaagatgttgataataaaatgaaata |
102 |
Q |
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| T |
38316115 |
ccaataattatatcttttatattttttgtttttataacttcatcgatgttgagattacgactctatctatagtctaagatgttgataataaaatgaaata |
38316214 |
T |
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| Q |
103 |
aggcattaaataatattataattgaattgtg |
133 |
Q |
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| T |
38316215 |
aggcattaaataatattataattgaattgtg |
38316245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 2472550 - 2472675
Alignment:
| Q |
8 |
ccaataattatatcttttatattttttgttttataacttcatggatgttgagattacgactctgtagtctaagatgttgataataaaatgaaataaggca |
107 |
Q |
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| T |
2472550 |
ccaataattgtatcttttatatttttcgttttataacttcatggatgttaaaagtatgactctacattcagagatgttgataataaaatgaaattaggca |
2472649 |
T |
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| Q |
108 |
ttaaataatattataattgaattgtg |
133 |
Q |
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| T |
2472650 |
ctaaataatattataattgaattgtg |
2472675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 4734522 - 4734396
Alignment:
| Q |
8 |
ccaataattatatcttttatattttttgtttt-ataacttcatggatgttgagattacgactctgtagtctaagatgttgataataaaatgaaataaggc |
106 |
Q |
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| T |
4734522 |
ccaataattgtatcttttattttttttctttttacaacttcatggatgttgaaactatgactctacactcaaagatgttgataataaaatgaaattaggc |
4734423 |
T |
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| Q |
107 |
attaaataatattataattgaattgtg |
133 |
Q |
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| T |
4734422 |
actaaataatattataactgaattgtg |
4734396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 21319919 - 21319974
Alignment:
| Q |
70 |
tgtagtctaagatgttgataataaaatgaaataaggcattaaataatattataatt |
125 |
Q |
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| T |
21319919 |
tgtattctatgatgttggtaataaaatgaattaaggcaataaagaatattataatt |
21319974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 1905217 - 1905261
Alignment:
| Q |
70 |
tgtagtctaagatgttgataataaaatgaaataaggcattaaata |
114 |
Q |
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| T |
1905217 |
tgtactctaagatgatggcaataaaatgaaataaggcattaaata |
1905261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 7235794 - 7235850
Alignment:
| Q |
65 |
gactctgtagtctaagatgttgataataaaatgaaataaggcattaaataatattat |
121 |
Q |
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| T |
7235794 |
gactttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattat |
7235850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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