View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-3 (Length: 1082)
Name: NF5039-Insertion-3
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 647
Target Start/End: Original strand, 144944 - 145586
Alignment:
| Q |
8 |
tttatgtcacaaaagaagtatgttttggagatttttaccagcttccaaatggaggattacgatgcagtttgcactcctagttctgcagatttgaatctaa |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| | ||||||| |||||||||| |||||||||||| || |||| |
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| T |
144944 |
tttatgtcacaaaagaagtatgttttggagattttgagcaggttccaaatggaggattgcaatgcagtctgcactcctacttctgcagattttaagctaa |
145043 |
T |
|
| Q |
108 |
aaaggtatttaaataggaagaaggtatattcctctttcgataagaaaattgtaggaattttgatttatttaacttcaaccaggccagatataatgcatgt |
207 |
Q |
| |
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||||| |||| ||| ||||||||||| ||||| || || ||||| ||||||| |||| |||||| ||| ||||||||||||| ||||||||||||||||| |
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| T |
145044 |
aaagggattttaatgggaagaaggtagattccactctctataagcaaattgttggaagtttgatgtatctaacttcaaccagaccagatataatgcatgt |
145143 |
T |
|
| Q |
208 |
tgtcagccttatcagtcggtatatggagaatccaaga--gttacacctcctagcagctaaa-gaattttaaggtacttcaaaggaactattgattttgga |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||| |||||||| |||||||||| |||||||||| |
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| T |
145144 |
tgttagccttatcagtcggtatatggagaatccaacaaagttacacctcctagaagctaaaagaattttcaggtacttgaaaggaactagtgattttgga |
145243 |
T |
|
| Q |
305 |
gtgttgtataaaaagggagagcaaaaaggtttgtttggcttcaacaacggcgactatgctagagatgaagatgtcaggaaaagtaggtctgaatatgtat |
404 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||| |||| | || | ||||||||| |||||||||||| ||||||||| | |||| |||||| | |
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| T |
145244 |
gtgttctataaaaagggagaggaaaagggtttgtttggattcagcgacagtgactatgctggagatgaagatgacaggaaaagcacatctggatatgtct |
145343 |
T |
|
| Q |
405 |
tcatgataggctcaggttcagtttcatggccatctaaaaaacaaccaatagttacgttgtccactactatagctgagtttattgcagctaaatcatgtgc |
504 |
Q |
| |
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||||||| ||||||||| || |||||||| |||| |||||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
145344 |
tcatgatgggctcaggtgcaatttcatggtcatccaaaaaacaaccaatagttactttgtctactactgaagctgagtttattgcagctacatcatgtgc |
145443 |
T |
|
| Q |
505 |
ttgctaagtcatttggttgagaaggttaattagagagcttggttatgatgaagaagagcccacaccactgttttacgataatgtctctgcaattaagttg |
604 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| | |||| |||||||||||| | |||||| || |
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|
| T |
145444 |
ttgccaagccatttggttgagaaggctaattagagagcttggatatgatgaagaagatcccacaccagtattttgtgataatgtctctaccattaagctg |
145543 |
T |
|
| Q |
605 |
tcaaagaattatgttttacacgggaggagcaaacatatagatg |
647 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
145544 |
tcaaaaaattatgttctacacgggaggagcaaacatatagatg |
145586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 647
Target Start/End: Original strand, 152965 - 153607
Alignment:
| Q |
8 |
tttatgtcacaaaagaagtatgttttggagatttttaccagcttccaaatggaggattacgatgcagtttgcactcctagttctgcagatttgaatctaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| | ||||||| |||||||||| |||||||||||| || |||| |
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|
| T |
152965 |
tttatgtcacaaaagaagtatgttttggagattttgagcaggttccaaatggaggattgcaatgcagtctgcactcctacttctgcagattttaagctaa |
153064 |
T |
|
| Q |
108 |
aaaggtatttaaataggaagaaggtatattcctctttcgataagaaaattgtaggaattttgatttatttaacttcaaccaggccagatataatgcatgt |
207 |
Q |
| |
|
||||| |||| ||| ||||||||||| ||||| || || ||||| ||||||| |||| |||||| ||| ||||||||||||| ||||||||||||||||| |
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|
| T |
153065 |
aaagggattttaatgggaagaaggtagattccactctctataagcaaattgttggaagtttgatgtatctaacttcaaccagaccagatataatgcatgt |
153164 |
T |
|
| Q |
208 |
tgtcagccttatcagtcggtatatggagaatccaaga--gttacacctcctagcagctaaa-gaattttaaggtacttcaaaggaactattgattttgga |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||| |||||||| |||||||||| |||||||||| |
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|
| T |
153165 |
tgttagccttatcagtcggtatatggagaatccaacaaagttacacctcctagaagctaaaagaattttcaggtacttgaaaggaactagtgattttgga |
153264 |
T |
|
| Q |
305 |
gtgttgtataaaaagggagagcaaaaaggtttgtttggcttcaacaacggcgactatgctagagatgaagatgtcaggaaaagtaggtctgaatatgtat |
404 |
Q |
| |
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||||| ||||||||||||||| |||| ||||||||||| |||| | || | ||||||||| |||||||||||| ||||||||| | |||| |||||| | |
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| T |
153265 |
gtgttctataaaaagggagaggaaaagggtttgtttggattcagcgacagtgactatgctggagatgaagatgacaggaaaagcacatctggatatgtct |
153364 |
T |
|
| Q |
405 |
tcatgataggctcaggttcagtttcatggccatctaaaaaacaaccaatagttacgttgtccactactatagctgagtttattgcagctaaatcatgtgc |
504 |
Q |
| |
|
||||||| ||||||||| || |||||||| |||| |||||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||||||| |
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|
| T |
153365 |
tcatgatgggctcaggtgcaatttcatggtcatccaaaaaacaaccaatagttactttgtctactactgaagctgagtttattgcagctacatcatgtgc |
153464 |
T |
|
| Q |
505 |
ttgctaagtcatttggttgagaaggttaattagagagcttggttatgatgaagaagagcccacaccactgttttacgataatgtctctgcaattaagttg |
604 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| | |||| |||||||||||| | |||||| || |
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|
| T |
153465 |
ttgccaagccatttggttgagaaggctaattagagagcttggatatgatgaagaagatcccacaccagtattttgtgataatgtctctaccattaagctg |
153564 |
T |
|
| Q |
605 |
tcaaagaattatgttttacacgggaggagcaaacatatagatg |
647 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
153565 |
tcaaaaaattatgttctacacgggaggagcaaacatatagatg |
153607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 486 - 647
Target Start/End: Original strand, 28006222 - 28006380
Alignment:
| Q |
486 |
ttgcagctaaatcatgtgcttgctaagtcatttggttgagaaggttaattagagagcttggttatgatgaagaagagcccacaccactgttttacgataa |
585 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| |
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|
| T |
28006222 |
ttgcagctacatcatgtacttgctaagtcatttggttgagaaggttaattagagagcttggttatgataaaga---gcccacaccagtgttttgcgataa |
28006318 |
T |
|
| Q |
586 |
tgtctctgcaattaagttgtcaaagaattatgttttacacgggaggagcaaacatatagatg |
647 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28006319 |
tgcctctgcaattaagttgtcaaagaattatgttttacaggggaggagcaaacatatagatg |
28006380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 264 - 457
Target Start/End: Original strand, 28006028 - 28006220
Alignment:
| Q |
264 |
aaagaattttaaggtacttcaaaggaactattgattttggagtgttgtataaaaagggagagcaaaaaggtttgtttggcttcaacaacggcgactatgc |
363 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | || | |||||||| |
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|
| T |
28006028 |
aaagaattttgaggtacttgaaaggaactattgattttgga-tgttgtataaaaagggagagcaaaagggtttgtttggcttcagctacagtgactatgc |
28006126 |
T |
|
| Q |
364 |
tagagatgaagatgtcaggaaaagtaggtctgaatatgtattcatgataggctcaggttcagtttcatggccatctaaaaaacaaccaatagtt |
457 |
Q |
| |
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| |||||||||||| |||||||||| |||||||||||| ||||||| ||||||||| ||||||||||| |||| ||||||||| |||||||| |
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|
| T |
28006127 |
tgaagatgaagatgttaggaaaagtacgtctgaatatgtcctcatgatgggctcaggtgcagtttcatggtcatccaaaaaacaatcaatagtt |
28006220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 646 - 725
Target Start/End: Original strand, 145613 - 145692
Alignment:
| Q |
646 |
tgcaaggatggtgttattgatgttatctattgcaagagtgaggaacaaattacagatataatgacaaaacctctcaagac |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
145613 |
tgcaaggatggtgttattgatgttatctattgcagaagtgaggaacaaattgcagatataatgacaaaacctctcaagac |
145692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 646 - 725
Target Start/End: Original strand, 153634 - 153713
Alignment:
| Q |
646 |
tgcaaggatggtgttattgatgttatctattgcaagagtgaggaacaaattacagatataatgacaaaacctctcaagac |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
153634 |
tgcaaggatggtgttattgatgttatctattgcagaagtgaggaacaaattgcagatataatgacaaaacctctcaagac |
153713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 646 - 733
Target Start/End: Original strand, 28006407 - 28006494
Alignment:
| Q |
646 |
tgcaaggatggtgttattgatgttatctattgcaagagtgaggaacaaattacagatataatgacaaaacctctcaagactgcaatgt |
733 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||| || |||||| ||||||||||||||| |
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|
| T |
28006407 |
tgcaaggatggtgttatagatgttatctattgcaagaatgaggaacaaactgcagatataataacgaaacctgtcaagactgcaatgt |
28006494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 918 - 1043
Target Start/End: Original strand, 28006956 - 28007079
Alignment:
| Q |
918 |
aaaatattttgggcatcgacgacgtacatgaaaggcgaagattggtgctgaca-tattagattgaacaaaagttttatacatgcatgagaatagtctaaa |
1016 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||| |||||||||||| |||| |||||||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
28006956 |
aaaatattttgggcatcgacgatgcac-tgaaaggtgaagattggtgcggacaatattagattgaacaaaagttttg---atacatgataatagtctaaa |
28007051 |
T |
|
| Q |
1017 |
a-ctcttaaggtggtatacgaaatagca |
1043 |
Q |
| |
|
| ||||||||||| |||||||||||||| |
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|
| T |
28007052 |
aactcttaaggtgatatacgaaatagca |
28007079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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