View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039-Insertion-5 (Length: 886)
Name: NF5039-Insertion-5
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 643; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 877
Target Start/End: Original strand, 3249178 - 3250040
Alignment:
| Q |
8 |
gttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagattctttctaggcagagagt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3249178 |
gttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagattctttctatgcagagagt |
3249277 |
T |
|
| Q |
108 |
gtgagtcttttctagcaccagagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcattcctggttttcaatttgacaggtccttc |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3249278 |
gtgagtcttttctagcaccagagaccttgcccaacatgtcagcatcaacctgtttcttgccattcaaatcatttttggttttcaatttgacaggtccttc |
3249377 |
T |
|
| Q |
208 |
agtgttgtttgatccattcaatttcctacaatcacatgcacatcaagtcgtgaattattttcattagtgttgtctccttccttgcattagtagtaaattc |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249378 |
agtgttgtttgatccattcaatttcctacaatcacatgcacattaagtcgtgaattattttcattagtgttgtctccttccttgcattagtagtaaattc |
3249477 |
T |
|
| Q |
308 |
ttttcaatcaatcaatagtactgtactgtttatatgtataagccaagcacaggaagttaagtacgtttacgtgaatgacacaaattcttcttcttagctc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249478 |
ttttcaatcaatcaatagtactgtactgtttatatgtataagccaagcacaggaagttaagtacgtttacgtgaatgacacaaattcttcttcttagctc |
3249577 |
T |
|
| Q |
408 |
tattattacattaagtnnnnnnnnnnggctctattattacattgttcagttnnnnnnncgctctattccattaagttcaggaacgtactccacgtccaca |
507 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
3249578 |
tattattacattaagtaaaaaaaaaaggctatattattacattgttcggttaaaaaaaagctctattccattaagttcaggaacgtactccacgttcaca |
3249677 |
T |
|
| Q |
508 |
ttaataaatttaattggagcatgtgtatattaagaaattttactgaaaatacatgtacagttgaattatacttcgtgacaattcatttggcaagagttca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3249678 |
ttaataaatttaattggagcatgtgtatattaagaaattttactgaaaatacatgtacagttgaattatacttcgtgacaattcatttggcaagagttca |
3249777 |
T |
|
| Q |
608 |
catcgttaccnnnnnnngtaatagagtcctacagtaaccccaaaaaatttaaagggaaatatcaaaattacttttagttgcgtgtagaacaagacataaa |
707 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
3249778 |
catcgttacctttttttgtaatagagtcctacagtaaccc--aaaaattaaaagggaaatatc-aaattac-tttagttgcgtgtagaacaagacataaa |
3249873 |
T |
|
| Q |
708 |
ttgcataaagtatacttggnnnnnnngagaaatcttacaattccaggggagataacaatgccgtttgataccaatagcgatttaagtctagcat-agaga |
806 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||| || ||||||||||||| ||||| |
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| T |
3249874 |
ttgcataaagtatacttgg-aagaaagagaaatcttacaattcca-gggagataacaatgtcg-ttgataccaatag-ga-ttaagtctagcataagaga |
3249968 |
T |
|
| Q |
807 |
ttagtcgcgcacaacactgcgaatcaagttatagacagtacaaaaaca-gattatctcttggtggagaaaat |
877 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |
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|
| T |
3249969 |
ttagtctcgcacaacactgcgaatcaagttatagacggtacaaaaacacgattatctcttgatggagaaaat |
3250040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 36905449 - 36905221
Alignment:
| Q |
11 |
gtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagattctttctaggcagagagtgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| | ||||||||| ||||||||||||||| |
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| T |
36905449 |
gtttcaaggtcgaaaatcttaacaggggagttcacaaactcagcaatatctttatgcatcaaatcagagccatctagattcttggtaggcagagagtgtg |
36905350 |
T |
|
| Q |
111 |
agtcttttctagcaccagagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcattcctggttttcaatttgacaggtccttcagt |
210 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
36905349 |
agtcttttcaagcaccagataccttgcccaacatgacagcatcaacctgtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagt |
36905250 |
T |
|
| Q |
211 |
gttgtttgatccattcaatttcctacaat |
239 |
Q |
| |
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||||||||||||||||| ||||||||||| |
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|
| T |
36905249 |
gttgtttgatccattcagtttcctacaat |
36905221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 257 - 418
Target Start/End: Original strand, 3243408 - 3243572
Alignment:
| Q |
257 |
gtgaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatagtact---gtactgtttatatgtataagccaa |
353 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||||||| ||| ||||||||| || |
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| T |
3243408 |
gtgaattattctcattggtgttgtctccttccttgcattagtagtaaaaaaaattcaatctattaatagtagtaatgtactgtatatgtgtataagctaa |
3243507 |
T |
|
| Q |
354 |
gcacaggaagttaagtacgtttacgtgaatgacacaaattcttcttcttagctctattattacat |
418 |
Q |
| |
|
|||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3243508 |
gcactggaaattaagtgcgtttacgtgaatgacacaaattcttcttcttagctctattattacat |
3243572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 28102554 - 28102782
Alignment:
| Q |
11 |
gtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagattctttctaggcagagagtgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| | ||||||||| ||||| |||||||||| |
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| T |
28102554 |
gtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtttctttatgcatcaaatcagagccatctagattcttgctaggaagagagtgtg |
28102653 |
T |
|
| Q |
111 |
agtcttttctagcaccagagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcattcctggttttcaatttgacaggtccttcagt |
210 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
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| T |
28102654 |
agtcttttcgagcaccagagagcttgcccaacgtgtcagcatcaacctgtttcttgccactcaaatcatttctggttttcaatttgacaggtccgtcagt |
28102753 |
T |
|
| Q |
211 |
gttgtttgatccattcaatttcctacaat |
239 |
Q |
| |
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||||||||||||||||| ||||||||||| |
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|
| T |
28102754 |
gttgtttgatccattcagtttcctacaat |
28102782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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